Pakket: abyss (2.3.9-1)

[ Bron: abyss  ]

de novo, parallel, sequence assembler for short reads

ABySS is a de novo, parallel, sequence assembler that is designed for short reads. It may be used to assemble genome or transcriptome sequence data. Parallelization is achieved using MPI, OpenMP and pthread.

Tags: Field: Biology, Implemented in: C, User Interface: Command Line, Role: Program

Andere aan abyss gerelateerde pakketten

• dep: bsdextrautils

  extra utilities from 4.4BSD-Lite

• dep: libc6 (>= 2.38)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet ppc64el, riscv64]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

• dep: libgomp1 (>= 4.9)

  GCC OpenMP (GOMP) support library

• dep: libopenmpi3t64 (>= 4.1.6)

  high performance message passing library -- shared library

• dep: libsqlite3-0 (>= 3.5.9)

  SQLite 3 shared library

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

• dep: make

  utility for directing compilation

• dep: openmpi-bin

  high performance message passing library -- binaries

• dep: openmpi-common

  high performance message passing library -- common files

• dep: perl

  Larry Wall's Practical Extraction and Report Language

abyss downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	3.242,0 kB	10.011,0 kB	[overzicht]
arm64	2.993,3 kB	10.611,0 kB	[overzicht]
mips64el	3.105,1 kB	12.554,0 kB	[overzicht]
ppc64el	3.156,3 kB	12.403,0 kB	[overzicht]
riscv64	3.182,1 kB	8.235,0 kB	[overzicht]