套件：stacks（2.68+dfsg-1）

[ 原始碼： stacks  ]

pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>

其他與 stacks 有關的套件

• dep: bsdextrautils

  extra utilities from 4.4BSD-Lite

• dep: libc6 (>= 2.38)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libdbi-perl

  Perl Database Interface (DBI)

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf, ppc64el, riscv64]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.6)

  壓縮函式庫 - 跑程式時用(runtime)

• rec: libspreadsheet-writeexcel-perl

  module to create Excel spreadsheets

• rec: littler

  GNU R scripting and command-line front-end -- transition package
  同時作為一個虛擬套件由這些套件填實： r-cran-littler

• sug: gdb

  GNU Debugger

下載 stacks

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
amd64	1，229。7 kB	6，153。0 kB	[檔案列表]
arm64	1，053。9 kB	5，829。0 kB	[檔案列表]
armel	1，021。0 kB	5，341。0 kB	[檔案列表]
armhf	1，044。3 kB	3，781。0 kB	[檔案列表]
i386	1，299。2 kB	6，437。0 kB	[檔案列表]
mips64el	1，102。8 kB	7，664。0 kB	[檔案列表]
ppc64el	1，168。3 kB	7，109。0 kB	[檔案列表]
riscv64	1，145。9 kB	4，405。0 kB	[檔案列表]
s390x	1，156。0 kB	6，289。0 kB	[檔案列表]