Package: stacks (2.68+dfsg-1)

[ Source: stacks  ]

pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>

Other Packages Related to stacks

• dep: bsdextrautils

  extra utilities from 4.4BSD-Lite

• dep: libc6 (>= 2.38)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libdbi-perl

  Perl Database Interface (DBI)

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, ppc64el, riscv64]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.6)

  compression library - runtime

• rec: libspreadsheet-writeexcel-perl

  module to create Excel spreadsheets

• rec: littler

  GNU R scripting and command-line front-end -- transition package
  also a virtual package provided by r-cran-littler

• sug: gdb

  GNU Debugger

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Architecture	Package Size	Installed Size	Files
amd64	1,229.7 kB	6,153.0 kB	[list of files]
arm64	1,053.9 kB	5,829.0 kB	[list of files]
armel	1,021.0 kB	5,341.0 kB	[list of files]
armhf	1,044.3 kB	3,781.0 kB	[list of files]
i386	1,299.2 kB	6,437.0 kB	[list of files]
mips64el	1,102.8 kB	7,664.0 kB	[list of files]
ppc64el	1,168.3 kB	7,109.0 kB	[list of files]
riscv64	1,145.9 kB	4,405.0 kB	[list of files]
s390x	1,156.0 kB	6,289.0 kB	[list of files]