Pakket: stacks (2.68+dfsg-2)

[ Bron: stacks  ]

pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>

Andere aan stacks gerelateerde pakketten

• dep: bsdextrautils

  extra utilities from 4.4BSD-Lite

• dep: libc6 (>= 2.38)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libdbi-perl

  Perl Database Interface (DBI)

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, ppc64el, riscv64]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.6)

  compressiebibliotheek - programma's

• rec: libspreadsheet-writeexcel-perl

  module to create Excel spreadsheets

• rec: littler

  GNU R scripting and command-line front-end -- transition package
  Ook een virtueel pakket geboden door: r-cran-littler

• sug: gdb

  GNU Debugger

stacks downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	1.231,5 kB	6.161,0 kB	[overzicht]
arm64	1.057,3 kB	5.829,0 kB	[overzicht]
armel	1.024,3 kB	5.681,0 kB	[overzicht]
armhf	1.046,8 kB	4.081,0 kB	[overzicht]
i386	1.301,0 kB	6.437,0 kB	[overzicht]
mips64el	1.123,1 kB	7.726,0 kB	[overzicht]
ppc64el	1.170,8 kB	7.109,0 kB	[overzicht]
riscv64	1.148,9 kB	4.409,0 kB	[overzicht]
s390x	1.157,7 kB	6.289,0 kB	[overzicht]