Pakket: bali-phy (3.6.1+dfsg-3)

[ Bron: bali-phy  ]

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

Andere aan bali-phy gerelateerde pakketten

• dep: libboost-chrono1.83.0t64 (>= 1.83.0)

  C++ representation of time duration, time point, and clocks

• dep: libboost-filesystem1.83.0 (>= 1.83.0)

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-program-options1.83.0 (>= 1.83.0)

  program options library for C++

• dep: libboost-random1.83.0 (>= 1.83.0)

  Boost Random Number Library

• dep: libc6 (>= 2.38)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libcairo2 (>= 1.4.10)

  Cairo 2D vector graphics library

• dep: libgcc-s1 (>= 3.0) [ppc64el, s390x]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [amd64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el, riscv64]

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• rec: gnuplot

  Command-line driven interactive plotting program.
  Ook een virtueel pakket geboden door: gnuplot-nox, gnuplot-qt, gnuplot-x11

• rec: r-base

  GNU R statistical computation and graphics system

• sug: figtree

  graphical phylogenetic tree viewer

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

bali-phy downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	6.676,8 kB	39.067,0 kB	[overzicht]
arm64	6.024,2 kB	36.555,0 kB	[overzicht]
armel	5.076,0 kB	32.497,0 kB	[overzicht]
armhf	4.629,1 kB	23.653,0 kB	[overzicht]
i386	6.350,6 kB	37.805,0 kB	[overzicht]
mips64el	5.923,0 kB	44.997,0 kB	[overzicht]
ppc64el	6.422,8 kB	42.177,0 kB	[overzicht]
riscv64	6.670,8 kB	31.791,0 kB	[overzicht]
s390x	5.229,2 kB	36.851,0 kB	[overzicht]