[ 原始碼: nanopolish ]
套件:nanopolish(0.14.0-1 以及其他的)
consensus caller for nanopore sequencing data
Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.
其他與 nanopolish 有關的套件
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- dep: libc6 (>= 2.23) [sparc64]
- GNU C 函式庫:共用函式庫
同時作為一個虛擬套件由這些套件填實: libc6-udeb
- dep: libc6 (>= 2.29) [ppc64]
- dep: libc6 (>= 2.34) [除 alpha, ia64, ppc64, sh4, sparc64, x32]
- dep: libc6 (>= 2.37) [sh4]
- dep: libc6 (>= 2.38) [x32]
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- dep: libc6.1 (>= 2.34) [alpha]
- GNU C 函式庫:共用函式庫
同時作為一個虛擬套件由這些套件填實: libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
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- dep: libgcc-s1 (>= 3.3.1) [amd64, arm64, i386, mips64el, x32]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.4) [alpha, riscv64]
- dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
- dep: libgcc-s1 (>= 4.2) [ia64, sh4]
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- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC 支援函式庫
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- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC 支援函式庫
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- dep: libgcc1 (>= 1:3.4) [sparc64]
- 套件暫時不可用
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- dep: libgomp1 (>= 4.9) [sparc64]
- GCC OpenMP (GOMP) support library
- dep: libgomp1 (>= 6) [除 sparc64]
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- dep: libhdf5-100 [sparc64]
- 套件暫時不可用
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- dep: libhdf5-103-1 [ppc64]
- HDF5 C runtime files - serial version
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- dep: libhdf5-103-1t64 [除 ppc64, sparc64]
- HDF5 C runtime files - serial version
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- dep: libhts2 [sparc64]
- 套件暫時不可用
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- dep: libhts3 (>= 1.10) [ppc64]
- C library for high-throughput sequencing data formats
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- dep: libhts3t64 (>= 1.17) [除 ppc64, sparc64]
- C library for high-throughput sequencing data formats
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- dep: libslow5-0 (>= 0.5.1+dfsg) [hppa]
- library for reading & writing SLOW5 files
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- dep: libslow5-0t64 (>= 0.5.1) [除 hppa, ppc64, sparc64]
- library for reading & writing SLOW5 files
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- dep: libstdc++6 (>= 13.1) [除 ppc64, sparc64, x32]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 14) [x32]
- dep: libstdc++6 (>= 5.2) [sparc64]
- dep: libstdc++6 (>= 9) [ppc64]
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- dep: libstreamvbyte0 (>= 0.4.1) [除 ppc64, sparc64]
- fast integer compression in C using the StreamVByte codec
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
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- dep: perl [除 sparc64]
- Larry Wall's Practical Extraction and Report Language
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- dep: python3 [除 sparc64]
- interactive high-level object-oriented language (default python3 version)
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- dep: zlib1g (>= 1:1.1.4) [除 armel, armhf]
- 壓縮函式庫 - 跑程式時用(runtime)
- dep: zlib1g (>= 1:1.2.3.3) [armel, armhf]
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- rec: python3-biopython
- Python3 library for bioinformatics
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- rec: python3-pysam
- interface for the SAM/BAM sequence alignment and mapping format (Python 3)
下載 nanopolish
硬體架構 | 版本 | 套件大小 | 安裝後大小 | 檔案 |
---|---|---|---|---|
alpha (非官方移植版) | 0.14.0-1+b1 | 2,133。7 kB | 9,606。0 kB | [檔案列表] |
amd64 | 0.14.0-1+b1 | 2,144。8 kB | 9,343。0 kB | [檔案列表] |
arm64 | 0.14.0-1+b1 | 2,073。9 kB | 9,219。0 kB | [檔案列表] |
armel | 0.14.0-1+b1 | 2,078。6 kB | 9,253。0 kB | [檔案列表] |
armhf | 0.14.0-1+b1 | 2,085。1 kB | 8,861。0 kB | [檔案列表] |
hppa (非官方移植版) | 0.14.0-1+b1 | 2,149。1 kB | 9,501。0 kB | [檔案列表] |
i386 | 0.14.0-1+b1 | 2,167。9 kB | 9,413。0 kB | [檔案列表] |
ia64 (非官方移植版) | 0.14.0-1+b1 | 2,281。9 kB | 10,820。0 kB | [檔案列表] |
m68k (非官方移植版) | 0.14.0-1+b1 | 2,117。9 kB | 9,409。0 kB | [檔案列表] |
mips64el | 0.14.0-1+b1 | 2,105。4 kB | 9,592。0 kB | [檔案列表] |
ppc64 (非官方移植版) | 0.13.3-2 | 2,208。6 kB | 9,987。0 kB | [檔案列表] |
ppc64el | 0.14.0-1+b1 | 2,149。2 kB | 9,603。0 kB | [檔案列表] |
riscv64 | 0.14.0-1+b2 | 2,150。1 kB | 9,083。0 kB | [檔案列表] |
sh4 (非官方移植版) | 0.14.0-1+b1 | 2,257。1 kB | 9,347。0 kB | [檔案列表] |
sparc64 (非官方移植版) | 0.5.0-1+b1 | 1,799。8 kB | 3,490。0 kB | [檔案列表] |
x32 (非官方移植版) | 0.14.0-1+b2 | 2,147。7 kB | 9,517。0 kB | [檔案列表] |