套件：nanopolish（0.13.2-3）

[ 原始碼： nanopolish  ]

consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

其他與 nanopolish 有關的套件

• dep: libc6 (>= 2.29)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgcc-s1 (>= 3.3.1) [除 armel, armhf, mipsel, ppc64el]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhdf5-103-1

  HDF5 C runtime files - serial version

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 9)

  GNU Standard C++ Library v3

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4) [除 arm64]

  壓縮函式庫 - 跑程式時用(runtime)

  dep: zlib1g (>= 1:1.2.3.3) [arm64]

• rec: python3-biopython

  Python3 library for bioinformatics

• rec: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• sug: make

  utility for directing compilation

• sug: perl

  Larry Wall's Practical Extraction and Report Language

下載 nanopolish

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
amd64	2，199。8 kB	9，539。0 kB	[檔案列表]
arm64	2，130。2 kB	9，334。0 kB	[檔案列表]
armel	2，126。7 kB	9，405。0 kB	[檔案列表]
armhf	2，141。1 kB	8，985。0 kB	[檔案列表]
i386	2，247。0 kB	9，797。0 kB	[檔案列表]
mips64el	2，140。4 kB	9，757。0 kB	[檔案列表]
mipsel	2，163。9 kB	9，796。0 kB	[檔案列表]
ppc64el	2，202。2 kB	9，795。0 kB	[檔案列表]
s390x	2，134。3 kB	9，626。0 kB	[檔案列表]