套件：minimap2（2.27+dfsg-1 以及其他的）

[ 原始碼： minimap2  ]

versatile pairwise aligner for genomic and spliced nucleotide sequences

Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.

For ~10kb noisy reads sequences, minimap2 is tens of times faster than mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more accurate on simulated long reads and produces biologically meaningful alignment ready for downstream analyses. For >100bp Illumina short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data. Detailed evaluations are available from the minimap2 paper or the preprint.

其他與 minimap2 有關的套件

• dep: libc6 (>= 2.34) [除 alpha, ia64, sh4]

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: zlib1g (>= 1:1.1.4) [除 armel, armhf, hppa, m68k, sh4]

  壓縮函式庫 - 跑程式時用(runtime)

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, hppa, m68k, sh4]

下載 minimap2

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
alpha （非官方移植版）	2.27+dfsg-1	404。2 kB	576。0 kB	[檔案列表]
amd64	2.27+dfsg-1+b1	379。7 kB	508。0 kB	[檔案列表]
arm64	2.27+dfsg-1+b2	371。9 kB	512。0 kB	[檔案列表]
armel	2.27+dfsg-1+b1	389。0 kB	551。0 kB	[檔案列表]
armhf	2.27+dfsg-1+b1	390。1 kB	483。0 kB	[檔案列表]
hppa （非官方移植版）	2.27+dfsg-1+b1	412。0 kB	580。0 kB	[檔案列表]
i386	2.27+dfsg-1+b1	386。5 kB	535。0 kB	[檔案列表]
ia64 （非官方移植版）	2.24+dfsg-3+b1	441。2 kB	755。0 kB	[檔案列表]
m68k （非官方移植版）	2.27+dfsg-1+b1	387。6 kB	559。0 kB	[檔案列表]
mips64el	2.27+dfsg-1+b1	404。1 kB	584。0 kB	[檔案列表]
ppc64 （非官方移植版）	2.27+dfsg-1+b1	409。9 kB	640。0 kB	[檔案列表]
ppc64el	2.27+dfsg-1+b1	390。9 kB	576。0 kB	[檔案列表]
riscv64	2.27+dfsg-1+b1	410。7 kB	520。0 kB	[檔案列表]
s390x	2.27+dfsg-1+b1	410。9 kB	592。0 kB	[檔案列表]
sh4 （非官方移植版）	2.27+dfsg-1	422。4 kB	571。0 kB	[檔案列表]
sparc64 （非官方移植版）	2.27+dfsg-1+b1	392。8 kB	1，346。0 kB	[檔案列表]
x32 （非官方移植版）	2.27+dfsg-1	379。4 kB	510。0 kB	[檔案列表]