Pakket: minimap2 (2.27+dfsg-1 en anderen)

[ Bron: minimap2  ]

versatile pairwise aligner for genomic and spliced nucleotide sequences

Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.

For ~10kb noisy reads sequences, minimap2 is tens of times faster than mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more accurate on simulated long reads and produces biologically meaningful alignment ready for downstream analyses. For >100bp Illumina short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data. Detailed evaluations are available from the minimap2 paper or the preprint.

Andere aan minimap2 gerelateerde pakketten

• dep: libc6 (>= 2.34) [niet alpha, ia64, loong64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

  dep: libc6 (>= 2.41) [loong64]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: zlib1g (>= 1:1.1.4) [niet armel, armhf, hppa, m68k, sh4]

  compressiebibliotheek - programma's

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, hppa, m68k, sh4]

minimap2 downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	2.27+dfsg-1+b2	405,0 kB	577,0 kB	[overzicht]
amd64	2.27+dfsg-1+b3	381,5 kB	516,0 kB	[overzicht]
arm64	2.27+dfsg-1+b4	371,7 kB	512,0 kB	[overzicht]
armel	2.27+dfsg-1+b3	389,0 kB	575,0 kB	[overzicht]
armhf	2.27+dfsg-1+b3	389,5 kB	511,0 kB	[overzicht]
hppa (unofficial port)	2.27+dfsg-1+b3	407,5 kB	569,0 kB	[overzicht]
i386	2.27+dfsg-1+b3	388,0 kB	539,0 kB	[overzicht]
ia64 (unofficial port)	2.24+dfsg-3+b1	441,2 kB	755,0 kB	[overzicht]
loong64 (unofficial port)	2.27+dfsg-1+b3	376,0 kB	512,0 kB	[overzicht]
m68k (unofficial port)	2.27+dfsg-1+b2	384,8 kB	556,0 kB	[overzicht]
mips64el	2.27+dfsg-1+b3	403,7 kB	584,0 kB	[overzicht]
ppc64 (unofficial port)	2.27+dfsg-1+b3	408,4 kB	640,0 kB	[overzicht]
ppc64el	2.27+dfsg-1+b3	391,9 kB	576,0 kB	[overzicht]
riscv64	2.27+dfsg-1+b3	405,6 kB	512,0 kB	[overzicht]
s390x	2.27+dfsg-1+b3	411,5 kB	592,0 kB	[overzicht]
sh4 (unofficial port)	2.27+dfsg-1+b2	422,7 kB	572,0 kB	[overzicht]
sparc64 (unofficial port)	2.27+dfsg-1+b3	392,0 kB	1.346,0 kB	[overzicht]
x32 (unofficial port)	2.27+dfsg-1+b1	380,2 kB	511,0 kB	[overzicht]