软件包：minimap2（2.27+dfsg-1 以及其他的）

[ 源代码： minimap2  ]

versatile pairwise aligner for genomic and spliced nucleotide sequences

Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.

For ~10kb noisy reads sequences, minimap2 is tens of times faster than mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more accurate on simulated long reads and produces biologically meaningful alignment ready for downstream analyses. For >100bp Illumina short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data. Detailed evaluations are available from the minimap2 paper or the preprint.

其他与 minimap2 有关的软件包

• dep: libc6 (>= 2.34) [除 alpha, ia64, sh4]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: zlib1g (>= 1:1.1.4) [除 armel, armhf, hppa, m68k, sh4]

  压缩库 - 运行时

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, hppa, m68k, sh4]

下载 minimap2

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
alpha （非官方移植版）	2.27+dfsg-1+b1	405.1 kB	577.0 kB	[文件列表]
amd64	2.27+dfsg-1+b2	381.5 kB	516.0 kB	[文件列表]
arm64	2.27+dfsg-1+b3	371.8 kB	512.0 kB	[文件列表]
armel	2.27+dfsg-1+b2	388.9 kB	551.0 kB	[文件列表]
armhf	2.27+dfsg-1+b2	389.4 kB	479.0 kB	[文件列表]
hppa （非官方移植版）	2.27+dfsg-1+b2	407.3 kB	569.0 kB	[文件列表]
i386	2.27+dfsg-1+b2	388.0 kB	539.0 kB	[文件列表]
ia64 （非官方移植版）	2.24+dfsg-3+b1	441.2 kB	755.0 kB	[文件列表]
m68k （非官方移植版）	2.27+dfsg-1+b2	384.8 kB	556.0 kB	[文件列表]
mips64el	2.27+dfsg-1+b2	402.7 kB	584.0 kB	[文件列表]
ppc64 （非官方移植版）	2.27+dfsg-1+b2	408.5 kB	640.0 kB	[文件列表]
ppc64el	2.27+dfsg-1+b2	392.0 kB	576.0 kB	[文件列表]
riscv64	2.27+dfsg-1+b2	405.7 kB	512.0 kB	[文件列表]
s390x	2.27+dfsg-1+b2	411.4 kB	592.0 kB	[文件列表]
sh4 （非官方移植版）	2.27+dfsg-1+b1	422.6 kB	572.0 kB	[文件列表]
sparc64 （非官方移植版）	2.27+dfsg-1+b2	392.0 kB	1,346.0 kB	[文件列表]
x32 （非官方移植版）	2.27+dfsg-1+b1	380.2 kB	511.0 kB	[文件列表]