Package: minimap2 (2.27+dfsg-1 and others)

[ Source: minimap2  ]

versatile pairwise aligner for genomic and spliced nucleotide sequences

Minimap2 is a versatile sequence alignment program that aligns DNA or mRNA sequences against a large reference database. Typical use cases include: (1) mapping PacBio or Oxford Nanopore genomic reads to the human genome; (2) finding overlaps between long reads with error rate up to ~15%; (3) splice-aware alignment of PacBio Iso-Seq or Nanopore cDNA or Direct RNA reads against a reference genome; (4) aligning Illumina single- or paired-end reads; (5) assembly-to-assembly alignment; (6) full- genome alignment between two closely related species with divergence below ~15%.

For ~10kb noisy reads sequences, minimap2 is tens of times faster than mainstream long-read mappers such as BLASR, BWA-MEM, NGMLR and GMAP. It is more accurate on simulated long reads and produces biologically meaningful alignment ready for downstream analyses. For >100bp Illumina short reads, minimap2 is three times as fast as BWA-MEM and Bowtie2, and as accurate on simulated data. Detailed evaluations are available from the minimap2 paper or the preprint.

Other Packages Related to minimap2

• dep: libc6 (>= 2.34) [not alpha, ia64, sh4]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: zlib1g (>= 1:1.1.4) [not armel, armhf, hppa, m68k, sh4]

  compression library - runtime

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf, hppa, m68k, sh4]

Download minimap2

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.27+dfsg-1	404.2 kB	576.0 kB	[list of files]
amd64	2.27+dfsg-1+b1	379.7 kB	508.0 kB	[list of files]
arm64	2.27+dfsg-1+b2	371.9 kB	512.0 kB	[list of files]
armel	2.27+dfsg-1+b1	389.0 kB	551.0 kB	[list of files]
armhf	2.27+dfsg-1+b1	390.1 kB	483.0 kB	[list of files]
hppa (unofficial port)	2.27+dfsg-1+b1	412.0 kB	580.0 kB	[list of files]
i386	2.27+dfsg-1+b1	386.5 kB	535.0 kB	[list of files]
ia64 (unofficial port)	2.24+dfsg-3+b1	441.2 kB	755.0 kB	[list of files]
m68k (unofficial port)	2.27+dfsg-1+b1	387.6 kB	559.0 kB	[list of files]
mips64el	2.27+dfsg-1+b1	404.1 kB	584.0 kB	[list of files]
ppc64 (unofficial port)	2.27+dfsg-1+b1	409.9 kB	640.0 kB	[list of files]
ppc64el	2.27+dfsg-1+b1	390.9 kB	576.0 kB	[list of files]
riscv64	2.27+dfsg-1+b1	410.7 kB	520.0 kB	[list of files]
s390x	2.27+dfsg-1+b1	410.9 kB	592.0 kB	[list of files]
sh4 (unofficial port)	2.27+dfsg-1	422.4 kB	571.0 kB	[list of files]
sparc64 (unofficial port)	2.27+dfsg-1+b1	392.8 kB	1,346.0 kB	[list of files]
x32 (unofficial port)	2.27+dfsg-1	379.4 kB	510.0 kB	[list of files]