[ 原始碼： centrifuge ]
套件：centrifuge（1.0.4.2-1）
rapid and memory-efficient system for classification of DNA sequences
Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.
其他與 centrifuge 有關的套件
|
|
|
|
-
- dep: hisat2
- graph-based alignment of short nucleotide reads to many genomes
-
- dep: jellyfish
- count k-mers in DNA sequences
-
- dep: libc6 (>= 2.38)
- GNU C 函式庫：共用函式庫
同時作為一個虛擬套件由這些套件填實： libc6-udeb
-
- dep: libgcc-s1 (>= 3.0) [除 riscv64]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 3.4) [riscv64]
-
- dep: libstdc++6 (>= 13.1)
- GNU Standard C++ Library v3
-
- dep: python3
- interactive high-level object-oriented language (default python3 version)