[ 原始碼: canu ]
套件:canu(2.2+dfsg-5 以及其他的)
single molecule sequence assembler for genomes
Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).
Canu is a hierarchical assembly pipeline which runs in four steps:
* Detect overlaps in high-noise sequences using MHAP * Generate corrected sequence consensus * Trim corrected sequences * Assemble trimmed corrected sequences
其他與 canu 有關的套件
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- dep: gnuplot [alpha, m68k, sh4]
- Command-line driven interactive plotting program.
同時作為一個虛擬套件由這些套件填實: gnuplot-nox, gnuplot-qt, gnuplot-x11
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- dep: gnuplot-nox [除 alpha, m68k, sh4]
- Command-line driven interactive plotting program. No-X package
同時作為一個虛擬套件由這些套件填實: gnuplot-qt, gnuplot-x11 - 或者 gnuplot
- Command-line driven interactive plotting program.
同時作為一個虛擬套件由這些套件填實: gnuplot-nox, gnuplot-qt, gnuplot-x11
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- dep: libc6 (>= 2.29) [m68k]
- GNU C 函式庫:共用函式庫
同時作為一個虛擬套件由這些套件填實: libc6-udeb
- dep: libc6 (>= 2.32) [sh4]
- dep: libc6 (>= 2.34) [除 alpha, arm64, ia64, m68k, sh4]
- dep: libc6 (>= 2.38) [arm64]
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- dep: libc6.1 (>= 2.29) [alpha]
- GNU C 函式庫:共用函式庫
同時作為一個虛擬套件由這些套件填實: libc6.1-udeb
- dep: libc6.1 (>= 2.37) [ia64]
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- dep: libfilesys-df-perl
- Module to obtain filesystem disk space information
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- dep: libgcc-s1 (>= 3.4) [alpha]
- GCC 支援函式庫
- dep: libgcc-s1 (>= 4.2) [除 alpha, m68k, sparc64]
- dep: libgcc-s1 (>= 4.3) [sparc64]
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- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC 支援函式庫
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- dep: libgomp1 (>= 6)
- GCC OpenMP (GOMP) support library
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- dep: libsnappy1v5 (>= 1.1.10) [除 alpha, arm64, m68k, sh4, sparc64]
- fast compression/decompression library
- dep: libsnappy1v5 (>= 1.1.8) [sparc64]
- dep: libsnappy1v5 (>= 1.2.1) [arm64]
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- dep: libstdc++6 (>= 11)
- GNU Standard C++ Library v3
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
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- dep: mhap
- locality-sensitive hashing to detect long-read overlaps
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- dep: perl
- Larry Wall's Practical Extraction and Report Language
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- sug: nanopolish
- consensus caller for nanopore sequencing data
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- sug: pbgenomicconsensus [alpha, m68k, sh4]
- 套件暫時不可用
下載 canu
硬體架構 | 版本 | 套件大小 | 安裝後大小 | 檔案 |
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alpha (非官方移植版) | 2.0+dfsg-2 | 1,228。8 kB | 10,538。0 kB | [檔案列表] |
amd64 | 2.2+dfsg-5 | 1,379。8 kB | 13,027。0 kB | [檔案列表] |
arm64 | 2.2+dfsg-5+b1 | 1,293。4 kB | 13,910。0 kB | [檔案列表] |
ia64 (非官方移植版) | 2.2+dfsg-5 | 1,553。6 kB | 23,779。0 kB | [檔案列表] |
m68k (非官方移植版) | 2.0+dfsg-2 | 1,280。7 kB | 9,544。0 kB | [檔案列表] |
mips64el | 2.2+dfsg-5 | 1,566。0 kB | 17,652。0 kB | [檔案列表] |
ppc64 (非官方移植版) | 2.2+dfsg-5 | 1,419。2 kB | 17,724。0 kB | [檔案列表] |
ppc64el | 2.2+dfsg-5 | 1,410。8 kB | 16,873。0 kB | [檔案列表] |
riscv64 | 2.2+dfsg-5+b1 | 1,862。0 kB | 15,534。0 kB | [檔案列表] |
s390x | 2.2+dfsg-5 | 1,340。9 kB | 13,853。0 kB | [檔案列表] |
sh4 (非官方移植版) | 2.0+dfsg-2 | 1,230。0 kB | 8,637。0 kB | [檔案列表] |
sparc64 (非官方移植版) | 2.2+dfsg-5 | 1,507。0 kB | 50,253。0 kB | [檔案列表] |
x32 (非官方移植版) | 2.2+dfsg-5 | 1,386。5 kB | 12,548。0 kB | [檔案列表] |