套件：canu（2.0+dfsg-1）

[ 原始碼： canu  ]

single molecule sequence assembler for genomes

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

 * Detect overlaps in high-noise sequences using MHAP
 * Generate corrected sequence consensus
 * Trim corrected sequences
 * Assemble trimmed corrected sequences

其他與 canu 有關的套件

• dep: gnuplot

  Command-line driven interactive plotting program.
  同時作為一個虛擬套件由這些套件填實： gnuplot-nox, gnuplot-qt, gnuplot-x11

• dep: libc6 (>= 2.29)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libfilesys-df-perl

  Module to obtain filesystem disk space information

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf, i386, mipsel]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: mhap (>= 2.1.3)

  locality-sensitive hashing to detect long-read overlaps

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• sug: nanopolish

  consensus caller for nanopore sequencing data

• sug: pbgenomicconsensus

  套件暫時不可用

下載 canu

下載可用於所有硬體架構的

硬體架構	套件大小	安裝後大小	檔案
amd64	1，226。6 kB	9，210。0 kB	[檔案列表]
arm64	1，100。2 kB	8，667。0 kB	[檔案列表]
armel	1，075。7 kB	8，521。0 kB	[檔案列表]
armhf	1，101。1 kB	6，673。0 kB	[檔案列表]
i386	1，352。2 kB	10，418。0 kB	[檔案列表]
mips64el	1，342。8 kB	12，314。0 kB	[檔案列表]
mipsel	1，386。0 kB	11，249。0 kB	[檔案列表]
ppc64el	1，218。4 kB	12，366。0 kB	[檔案列表]
s390x	1，072。7 kB	9，029。0 kB	[檔案列表]