Package: canu (2.2+dfsg-5 and others)

[ Source: canu  ]

single molecule sequence assembler for genomes

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

 * Detect overlaps in high-noise sequences using MHAP
 * Generate corrected sequence consensus
 * Trim corrected sequences
 * Assemble trimmed corrected sequences

Other Packages Related to canu

• dep: gnuplot [alpha, m68k, sh4]

  Command-line driven interactive plotting program.
  also a virtual package provided by gnuplot-nox, gnuplot-qt, gnuplot-x11

• dep: gnuplot-nox [not alpha, m68k, sh4]

  Command-line driven interactive plotting program. No-X package
  also a virtual package provided by gnuplot-qt, gnuplot-x11

  or gnuplot

  Command-line driven interactive plotting program.
  also a virtual package provided by gnuplot-nox, gnuplot-qt, gnuplot-x11

• dep: libc6 (>= 2.29) [m68k]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.32) [sh4]

  dep: libc6 (>= 2.34) [not alpha, arm64, ia64, m68k, sh4]

  dep: libc6 (>= 2.38) [arm64]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libfilesys-df-perl

  Module to obtain filesystem disk space information

• dep: libgcc-s1 (>= 3.4) [alpha]

  GCC support library

  dep: libgcc-s1 (>= 4.2) [not alpha, m68k, sparc64]

  dep: libgcc-s1 (>= 4.3) [sparc64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libsnappy1v5 (>= 1.1.10) [not alpha, arm64, m68k, sh4, sparc64]

  fast compression/decompression library

  dep: libsnappy1v5 (>= 1.1.8) [sparc64]

  dep: libsnappy1v5 (>= 1.2.1) [arm64]

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: mhap

  locality-sensitive hashing to detect long-read overlaps

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• sug: nanopolish

  consensus caller for nanopore sequencing data

• sug: pbgenomicconsensus [alpha, m68k, sh4]

  Package not available

Download canu

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	2.0+dfsg-2	1,228.8 kB	10,538.0 kB	[list of files]
amd64	2.2+dfsg-5	1,379.8 kB	13,027.0 kB	[list of files]
arm64	2.2+dfsg-5+b1	1,293.4 kB	13,910.0 kB	[list of files]
ia64 (unofficial port)	2.2+dfsg-5	1,553.6 kB	23,779.0 kB	[list of files]
m68k (unofficial port)	2.0+dfsg-2	1,280.7 kB	9,544.0 kB	[list of files]
mips64el	2.2+dfsg-5	1,566.0 kB	17,652.0 kB	[list of files]
ppc64 (unofficial port)	2.2+dfsg-5	1,419.2 kB	17,724.0 kB	[list of files]
ppc64el	2.2+dfsg-5	1,410.8 kB	16,873.0 kB	[list of files]
riscv64	2.2+dfsg-5+b1	1,862.0 kB	15,534.0 kB	[list of files]
s390x	2.2+dfsg-5	1,340.9 kB	13,853.0 kB	[list of files]
sh4 (unofficial port)	2.0+dfsg-2	1,230.0 kB	8,637.0 kB	[list of files]
sparc64 (unofficial port)	2.2+dfsg-5	1,507.0 kB	50,253.0 kB	[list of files]
x32 (unofficial port)	2.2+dfsg-5	1,386.5 kB	12,548.0 kB	[list of files]