Pakket: canu (2.2+dfsg-5 en anderen)

[ Bron: canu  ]

single molecule sequence assembler for genomes

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

 * Detect overlaps in high-noise sequences using MHAP
 * Generate corrected sequence consensus
 * Trim corrected sequences
 * Assemble trimmed corrected sequences

Andere aan canu gerelateerde pakketten

• dep: gnuplot [alpha, m68k, sh4]

  Command-line driven interactive plotting program.
  Ook een virtueel pakket geboden door: gnuplot-nox, gnuplot-qt, gnuplot-x11

• dep: gnuplot-nox [niet alpha, m68k, sh4]

  Command-line driven interactive plotting program. No-X package
  Ook een virtueel pakket geboden door: gnuplot-qt, gnuplot-x11

  of gnuplot

  Command-line driven interactive plotting program.
  Ook een virtueel pakket geboden door: gnuplot-nox, gnuplot-qt, gnuplot-x11

• dep: libc6 (>= 2.29) [m68k]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.32) [sh4]

  dep: libc6 (>= 2.34) [niet alpha, arm64, ia64, m68k, sh4]

  dep: libc6 (>= 2.38) [arm64]

• dep: libc6.1 (>= 2.29) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libfilesys-df-perl

  Module to obtain filesystem disk space information

• dep: libgcc-s1 (>= 3.4) [alpha]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 4.2) [niet alpha, m68k, sparc64]

  dep: libgcc-s1 (>= 4.3) [sparc64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libsnappy1v5 (>= 1.1.10) [niet alpha, arm64, m68k, sh4, sparc64]

  fast compression/decompression library

  dep: libsnappy1v5 (>= 1.1.8) [sparc64]

  dep: libsnappy1v5 (>= 1.2.1) [arm64]

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: mhap

  locality-sensitive hashing to detect long-read overlaps

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• sug: nanopolish

  consensus caller for nanopore sequencing data

• sug: pbgenomicconsensus [alpha, m68k, sh4]

  Pakket niet beschikbaar

canu downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	2.0+dfsg-2	1.228,8 kB	10.538,0 kB	[overzicht]
amd64	2.2+dfsg-5	1.379,8 kB	13.027,0 kB	[overzicht]
arm64	2.2+dfsg-5+b1	1.293,4 kB	13.910,0 kB	[overzicht]
ia64 (unofficial port)	2.2+dfsg-5	1.553,6 kB	23.779,0 kB	[overzicht]
m68k (unofficial port)	2.0+dfsg-2	1.280,7 kB	9.544,0 kB	[overzicht]
mips64el	2.2+dfsg-5	1.566,0 kB	17.652,0 kB	[overzicht]
ppc64 (unofficial port)	2.2+dfsg-5	1.419,2 kB	17.724,0 kB	[overzicht]
ppc64el	2.2+dfsg-5	1.410,8 kB	16.873,0 kB	[overzicht]
riscv64	2.2+dfsg-5+b1	1.862,0 kB	15.534,0 kB	[overzicht]
s390x	2.2+dfsg-5	1.340,9 kB	13.853,0 kB	[overzicht]
sh4 (unofficial port)	2.0+dfsg-2	1.230,0 kB	8.637,0 kB	[overzicht]
sparc64 (unofficial port)	2.2+dfsg-5	1.507,0 kB	50.253,0 kB	[overzicht]
x32 (unofficial port)	2.2+dfsg-5	1.386,5 kB	12.548,0 kB	[overzicht]