Package: canu (2.0+dfsg-1)

[ Source: canu  ]

single molecule sequence assembler for genomes

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

 * Detect overlaps in high-noise sequences using MHAP
 * Generate corrected sequence consensus
 * Trim corrected sequences
 * Assemble trimmed corrected sequences

Other Packages Related to canu

• dep: gnuplot

  Command-line driven interactive plotting program.
  also a virtual package provided by gnuplot-nox, gnuplot-qt, gnuplot-x11

• dep: libc6 (>= 2.29)

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

• dep: libfilesys-df-perl

  Module to obtain filesystem disk space information

• dep: libgcc-s1 (>= 3.0) [not armel, armhf, i386, mipsel]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: mhap (>= 2.1.3)

  locality-sensitive hashing to detect long-read overlaps

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• sug: nanopolish

  consensus caller for nanopore sequencing data

• sug: pbgenomicconsensus

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Download for all available architectures

Architecture	Package Size	Installed Size	Files
amd64	1,226.6 kB	9,210.0 kB	[list of files]
arm64	1,100.2 kB	8,667.0 kB	[list of files]
armel	1,075.7 kB	8,521.0 kB	[list of files]
armhf	1,101.1 kB	6,673.0 kB	[list of files]
i386	1,352.2 kB	10,418.0 kB	[list of files]
mips64el	1,342.8 kB	12,314.0 kB	[list of files]
mipsel	1,386.0 kB	11,249.0 kB	[list of files]
ppc64el	1,218.4 kB	12,366.0 kB	[list of files]
s390x	1,072.7 kB	9,029.0 kB	[list of files]