Pakket: canu (2.0+dfsg-1)

[ Bron: canu  ]

single molecule sequence assembler for genomes

Canu is a fork of the Celera Assembler, designed for high-noise single-molecule sequencing (such as the PacBio RS II or Oxford Nanopore MinION).

Canu is a hierarchical assembly pipeline which runs in four steps:

 * Detect overlaps in high-noise sequences using MHAP
 * Generate corrected sequence consensus
 * Trim corrected sequences
 * Assemble trimmed corrected sequences

Andere aan canu gerelateerde pakketten

• dep: gnuplot

  Command-line driven interactive plotting program.
  Ook een virtueel pakket geboden door: gnuplot-nox, gnuplot-qt, gnuplot-x11

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libfilesys-df-perl

  Module to obtain filesystem disk space information

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, i386, mipsel]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: mhap (>= 2.1.3)

  locality-sensitive hashing to detect long-read overlaps

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• sug: nanopolish

  consensus caller for nanopore sequencing data

• sug: pbgenomicconsensus

  Pakket niet beschikbaar

canu downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	1.226,6 kB	9.210,0 kB	[overzicht]
arm64	1.100,2 kB	8.667,0 kB	[overzicht]
armel	1.075,7 kB	8.521,0 kB	[overzicht]
armhf	1.101,1 kB	6.673,0 kB	[overzicht]
i386	1.352,2 kB	10.418,0 kB	[overzicht]
mips64el	1.342,8 kB	12.314,0 kB	[overzicht]
mipsel	1.386,0 kB	11.249,0 kB	[overzicht]
ppc64el	1.218,4 kB	12.366,0 kB	[overzicht]
s390x	1.072,7 kB	9.029,0 kB	[overzicht]