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[ Source: htslib  ]

Package: tabix (1.20+ds-1)

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generic indexer for TAB-delimited genome position files

Tabix indexes files where some columns indicate sequence coordinates: name (usually a chromosome), start and stop. The input data file must be position sorted and compressed by bgzip (provided in this package), which has a gzip like interface. After indexing, tabix is able to quickly retrieve data lines by chromosomal coordinates. Fast data retrieval also works over network if an URI is given as a file name.

This package is built from the HTSlib source, and provides the bgzip, htsfile, and tabix tools.

Tags: Implemented in: C, Role: Program, Science: science::calculation, use::calculating, Supports Format: HTML, Hypertext Markup Language, Works with: Text

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Download tabix

Download for all available architectures
Architecture Package Size Installed Size Files
amd64 471.4 kB2,249.0 kB [list of files]
arm64 438.8 kB2,249.0 kB [list of files]
armel 401.4 kB2,062.0 kB [list of files]
armhf 404.8 kB1,494.0 kB [list of files]
i386 517.3 kB2,566.0 kB [list of files]
mips64el 430.6 kB2,618.0 kB [list of files]
ppc64el 508.1 kB3,017.0 kB [list of files]
riscv64 488.8 kB1,893.0 kB [list of files]
s390x 462.5 kB2,465.0 kB [list of files]