Pakket: bali-phy (3.6.1+dfsg-1)

[ Bron: bali-phy  ]

Bayesian Inference of Alignment and Phylogeny

BAli-Phy estimates multiple sequence alignments and evolutionary trees from unaligned DNA, amino acid, or codon sequences. BAli-Phy uses MCMC to estimate evolutionary trees, positive selection, and branch lengths while averaging over alternative alignments. BAli-Phy can display alignment ambiguity graphically in an alignment uncertainty (AU) plot.

BAli-Phy can also estimate phylogenies from a fixed alignment (like MrBayes and BEAST) using substitution models like GTR+gamma. BAli-Phy automatically estimates relative rates for each gene.

Andere aan bali-phy gerelateerde pakketten

• dep: libboost-chrono1.74.0 (>= 1.74.0)

  C++ representation of time duration, time point, and clocks

• dep: libboost-filesystem1.74.0 (>= 1.74.0)

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-program-options1.74.0 (>= 1.74.0)

  program options library for C++

• dep: libboost-random1.74.0 (>= 1.74.0)

  Boost Random Number Library

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libcairo2 (>= 1.4.10)

  Cairo 2D vector graphics library

• dep: libgcc-s1 (>= 3.0) [s390x]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [amd64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386, mipsel, ppc64el]

  dep: libgcc-s1 (>= 4.5) [arm64, mips64el]

• dep: libstdc++6 (>= 9)

  GNU Standard C++ Library v3

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• rec: gnuplot

  Command-line driven interactive plotting program.
  Ook een virtueel pakket geboden door: gnuplot-nox, gnuplot-qt, gnuplot-x11

• rec: r-base

  GNU R statistical computation and graphics system

• sug: figtree

  graphical phylogenetic tree viewer

• sug: seaview

  Multiplatform interface for sequence alignment and phylogeny

bali-phy downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	6.064,3 kB	35.817,0 kB	[overzicht]
arm64	5.434,7 kB	32.461,0 kB	[overzicht]
armel	4.569,9 kB	29.779,0 kB	[overzicht]
armhf	4.270,2 kB	22.071,0 kB	[overzicht]
i386	5.850,5 kB	35.191,0 kB	[overzicht]
mips64el	5.622,3 kB	42.347,0 kB	[overzicht]
mipsel	5.563,3 kB	40.550,0 kB	[overzicht]
ppc64el	6.142,8 kB	40.895,0 kB	[overzicht]
s390x	4.982,7 kB	35.461,0 kB	[overzicht]