Pakket: r-bioc-shortread (1.62.0-1 en anderen)

[ Bron: r-bioc-shortread  ]

GNU R classes and methods for high-throughput short-read sequencing data

This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.

Andere aan r-bioc-shortread gerelateerde pakketten

• dep: libc6 (>= 2.14) [amd64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.7) [hppa, m68k, mips64el, ppc64, s390x, sparc64]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.7) [alpha]

• dep: libgcc-s1 (>= 3.0) [niet hppa, ia64, m68k, sparc64]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libgcc1 (>= 1:3.0) [sparc64]

  Pakket niet beschikbaar

• dep: libgcc2 (>= 4.2.1) [m68k]

  Pakket niet beschikbaar

• dep: libgomp1 (>= 4.2.1) [m68k, sparc64]

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 11) [niet m68k, sparc64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [m68k, sparc64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-3.4 [m68k]

  Pakket niet beschikbaar

• dep: r-api-3.5 [sparc64]

  Pakket niet beschikbaar

• dep: r-api-4.0 [niet m68k, sparc64]

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.16 [x32]

  Pakket niet beschikbaar

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  Pakket niet beschikbaar

• dep: r-api-bioc-3.19 [niet hppa, ia64, m68k, sh4, sparc64, x32]

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-api-bioc-3.8 [sparc64]

  Pakket niet beschikbaar

• dep: r-base-core (>= 3.4.3-1) [m68k]

  GNU R core of statistical computation and graphics system

  dep: r-base-core (>= 3.5.2-1) [sparc64]

  dep: r-base-core (>= 4.2.2.20221110-1) [x32]

• dep: r-bioc-biobase [hppa, ia64, m68k, sh4, sparc64, x32]

  base functions for Bioconductor

  dep: r-bioc-biobase (>= 2.64.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-biocgenerics (>= 0.23.3) [hppa, ia64, m68k, sh4, sparc64, x32]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.50.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-biocparallel [hppa, ia64, m68k, sh4, sparc64, x32]

  BioConductor facilities for parallel evaluation

  dep: r-bioc-biocparallel (>= 1.38.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-biostrings (>= 2.37.1) [m68k]

  GNU R string objects representing biological sequences

  dep: r-bioc-biostrings (>= 2.47.6) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-biostrings (>= 2.72.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-genomeinfodb (>= 1.1.19) [m68k]

  BioConductor utilities for manipulating chromosome identifiers

  dep: r-bioc-genomeinfodb (>= 1.15.2) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-genomeinfodb (>= 1.40.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-genomicalignments (>= 1.15.6) [hppa, ia64, sh4, sparc64, x32]

  BioConductor representation and manipulation of short genomic alignments

  dep: r-bioc-genomicalignments (>= 1.40.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

  dep: r-bioc-genomicalignments (>= 1.5.4) [m68k]

• dep: r-bioc-genomicranges (>= 1.21.6) [m68k]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.31.8) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-genomicranges (>= 1.56.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-iranges (>= 2.13.12) [hppa, ia64, sh4, sparc64, x32]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.3.7) [m68k]

  dep: r-bioc-iranges (>= 2.38.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-pwalign (>= 1.0.0-2~0exp1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

  Perform pairwise sequence alignments

• dep: r-bioc-rhtslib [hppa, ia64, sh4, x32]

  HTSlib high-throughput sequencing library as GNU R package

  dep: r-bioc-rhtslib (>= 3.0.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-rsamtools (>= 1.21.4) [m68k]

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

  dep: r-bioc-rsamtools (>= 1.31.2) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-rsamtools (>= 2.20.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-s4vectors (>= 0.13.8) [m68k]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.17.25) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-s4vectors (>= 0.42.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-xvector [hppa, ia64, sh4, x32]

  BioConductor representation and manpulation of external sequences

  dep: r-bioc-xvector (>= 0.44.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-zlibbioc [hppa, ia64, sh4, x32]

  (Virtual) zlibbioc Bioconductor package

  dep: r-bioc-zlibbioc (>= 1.50.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-cran-hwriter

  HTML Writer - Outputs R objects in HTML format

• dep: r-cran-lattice

  GNU R package for 'Trellis' graphics

• dep: r-cran-latticeextra

  GNU R package of additional graphical displays based on lattice

• dep: zlib1g (>= 1:1.1.4)

  compressiebibliotheek - programma's

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]

  standard styles for vignettes and other Bioconductor documents

  sug: r-bioc-biocstyle (>= 2.32.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-biomart [hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

  sug: r-bioc-biomart (>= 2.60.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-genomicfeatures [hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R tools for making and manipulating transcript centric annotations

  sug: r-bioc-genomicfeatures (>= 1.56.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-cran-knitr [niet hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-runit [niet sparc64]

  GNU R package providing unit testing framework

r-bioc-shortread downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.62.0-1	5.095,0 kB	8.253,0 kB	[overzicht]
amd64	1.62.0-1	5.095,4 kB	8.206,0 kB	[overzicht]
arm64	1.62.0-1	5.091,8 kB	8.252,0 kB	[overzicht]
hppa (unofficial port)	1.60.0-2	5.064,8 kB	7.527,0 kB	[overzicht]
ia64 (unofficial port)	1.60.0-2	5.072,7 kB	7.620,0 kB	[overzicht]
m68k (unofficial port)	1.36.0-1	4.189,1 kB	6.069,0 kB	[overzicht]
mips64el	1.62.0-1	5.088,5 kB	8.266,0 kB	[overzicht]
ppc64 (unofficial port)	1.62.0-1	5.099,6 kB	8.320,0 kB	[overzicht]
ppc64el	1.62.0-1	5.097,7 kB	8.316,0 kB	[overzicht]
riscv64	1.62.0-1	5.094,1 kB	8.186,0 kB	[overzicht]
s390x	1.62.0-1	5.094,2 kB	8.216,0 kB	[overzicht]
sh4 (unofficial port)	1.60.0-2	5.066,6 kB	7.494,0 kB	[overzicht]
sparc64 (unofficial port)	1.40.0-1	4.896,8 kB	7.343,0 kB	[overzicht]
x32 (unofficial port)	1.56.1-1	5.043,0 kB	7.479,0 kB	[overzicht]