Paket: r-bioc-shortread (1.64.0-3 och andra)

[ Källkod: r-bioc-shortread  ]

GNU R classes and methods for high-throughput short-read sequencing data

This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.

Andra paket besläktade med r-bioc-shortread

• dep: libc6 (>= 2.14) [amd64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.7) [hppa, m68k, mips64el, ppc64, s390x, sparc64]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6.1-udeb

  dep: libc6.1 (>= 2.7) [alpha]

• dep: libgcc-s1 (>= 3.0) [ej hppa, ia64, m68k, sparc64]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC stödbibliotek

• dep: libgcc1 (>= 1:3.0) [sparc64]

  Paketet inte tillgängligt

• dep: libgcc2 (>= 4.2.1) [m68k]

  Paketet inte tillgängligt

• dep: libgomp1 (>= 4.2.1) [m68k, sparc64]

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 11) [ej m68k, sparc64]

  GNU standardbibliotek v3 för C++

  dep: libstdc++6 (>= 5.2) [m68k, sparc64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-3.4 [m68k]

  Paketet inte tillgängligt

• dep: r-api-3.5 [sparc64]

  Paketet inte tillgängligt

• dep: r-api-4.0 [ej m68k, sparc64]

  virtuellt paket som tillhandahålls av r-base-core

• dep: r-api-bioc-3.16 [x32]

  Paketet inte tillgängligt

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  Paketet inte tillgängligt

• dep: r-api-bioc-3.20 [ej hppa, ia64, m68k, sh4, sparc64, x32]

  virtuellt paket som tillhandahålls av r-bioc-biocgenerics

• dep: r-api-bioc-3.8 [sparc64]

  Paketet inte tillgängligt

• dep: r-base-core (>= 3.4.3-1) [m68k]

  GNU R core of statistical computation and graphics system

  dep: r-base-core (>= 3.5.2-1) [sparc64]

  dep: r-base-core (>= 4.2.2.20221110-1) [x32]

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.23.3)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.37.1) [m68k]

  GNU R string objects representing biological sequences

  dep: r-bioc-biostrings (>= 2.47.6) [ej m68k]

• dep: r-bioc-genomeinfodb (>= 1.1.19) [m68k]

  BioConductor utilities for manipulating chromosome identifiers

  dep: r-bioc-genomeinfodb (>= 1.15.2) [ej m68k]

• dep: r-bioc-genomicalignments (>= 1.15.6) [ej m68k]

  BioConductor representation and manipulation of short genomic alignments

  dep: r-bioc-genomicalignments (>= 1.5.4) [m68k]

• dep: r-bioc-genomicranges (>= 1.21.6) [m68k]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.31.8) [ej m68k]

• dep: r-bioc-iranges (>= 2.13.12) [ej m68k]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.3.7) [m68k]

• dep: r-bioc-pwalign [ej hppa, ia64, m68k, sh4, sparc64, x32]

  Perform pairwise sequence alignments

• dep: r-bioc-rhtslib [ej m68k, sparc64]

  HTSlib high-throughput sequencing library as GNU R package

• dep: r-bioc-rsamtools (>= 1.21.4) [m68k]

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

  dep: r-bioc-rsamtools (>= 1.31.2) [ej m68k]

• dep: r-bioc-s4vectors (>= 0.13.8) [m68k]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.17.25) [ej m68k]

• dep: r-bioc-xvector [ej m68k, sparc64]

  BioConductor representation and manpulation of external sequences

• dep: r-bioc-zlibbioc [hppa, ia64, sh4, x32]

  (Virtual) zlibbioc Bioconductor package

• dep: r-cran-hwriter

  HTML Writer - Outputs R objects in HTML format

• dep: r-cran-lattice

  GNU R package for 'Trellis' graphics

• dep: r-cran-latticeextra

  GNU R package of additional graphical displays based on lattice

• dep: zlib1g (>= 1:1.1.4)

  Kompressionsbibliotek - körtidspaket

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-biocstyle [ej m68k, sparc64]

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biomart

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-cran-knitr [ej hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-runit [ej sparc64]

  GNU R package providing unit testing framework

Hämta r-bioc-shortread

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
alpha (inofficiell anpassning)	1.64.0-3	5.097,0 kbyte	8.257,0 kbyte	[filförteckning]
amd64	1.64.0-3	5.097,5 kbyte	8.210,0 kbyte	[filförteckning]
arm64	1.64.0-3	5.093,3 kbyte	8.256,0 kbyte	[filförteckning]
hppa (inofficiell anpassning)	1.60.0-2	5.064,8 kbyte	7.527,0 kbyte	[filförteckning]
ia64 (inofficiell anpassning)	1.60.0-2	5.072,7 kbyte	7.620,0 kbyte	[filförteckning]
m68k (inofficiell anpassning)	1.36.0-1	4.189,1 kbyte	6.069,0 kbyte	[filförteckning]
mips64el	1.64.0-3	5.090,3 kbyte	8.270,0 kbyte	[filförteckning]
ppc64 (inofficiell anpassning)	1.64.0-3	5.101,6 kbyte	8.325,0 kbyte	[filförteckning]
ppc64el	1.64.0-3	5.099,2 kbyte	8.320,0 kbyte	[filförteckning]
riscv64	1.64.0-3	5.095,3 kbyte	8.190,0 kbyte	[filförteckning]
s390x	1.64.0-3	5.095,9 kbyte	8.220,0 kbyte	[filförteckning]
sh4 (inofficiell anpassning)	1.60.0-2	5.066,6 kbyte	7.494,0 kbyte	[filförteckning]
sparc64 (inofficiell anpassning)	1.40.0-1	4.896,8 kbyte	7.343,0 kbyte	[filförteckning]
x32 (inofficiell anpassning)	1.56.1-1	5.043,0 kbyte	7.479,0 kbyte	[filförteckning]