Pakket: r-bioc-genomicranges (1.56.1+dfsg-1 en anderen)

[ Bron: r-bioc-genomicranges  ]

BioConductor representation and manipulation of genomic intervals

The ability to efficiently store genomic annotations and alignments is playing a central role when it comes to analyze high-throughput sequencing data (a.k.a. NGS data). The package defines general purpose containers for storing genomic intervals as well as more specialized containers for storing alignments against a reference genome.

Andere aan r-bioc-genomicranges gerelateerde pakketten

• dep: libc6 (>= 2.16) [x32]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.4) [amd64, m68k, mips64el, ppc64, s390x, sparc64]

• dep: r-api-4.0

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.18 [hppa, ia64, m68k, sh4, x32]

  Pakket niet beschikbaar

• dep: r-api-bioc-3.19 [niet hppa, ia64, m68k, sh4, x32]

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-bioc-biocgenerics (>= 0.37.0) [hppa, ia64, m68k, sh4, x32]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.50.0) [niet hppa, ia64, m68k, sh4, x32]

• dep: r-bioc-genomeinfodb (>= 1.15.2) [hppa, ia64, m68k, sh4, x32]

  BioConductor utilities for manipulating chromosome identifiers

  dep: r-bioc-genomeinfodb (>= 1.40.1) [niet hppa, ia64, m68k, sh4, x32]

• dep: r-bioc-iranges (>= 2.31.2) [hppa, ia64, m68k, sh4, x32]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.38.1) [niet hppa, ia64, m68k, sh4, x32]

• dep: r-bioc-s4vectors (>= 0.27.12) [hppa, ia64, m68k, sh4, x32]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.42.1) [niet hppa, ia64, m68k, sh4, x32]

• dep: r-bioc-xvector (>= 0.29.2) [hppa, ia64, m68k, sh4, x32]

  BioConductor representation and manpulation of external sequences

  dep: r-bioc-xvector (>= 0.44.0) [niet hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-annotate [hppa, ia64, m68k, sh4, x32]

  BioConductor annotation for microarrays

  sug: r-bioc-annotate (>= 1.82.0) [niet hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-annotationdbi [hppa, ia64, m68k, sh4, x32]

  GNU R Annotation Database Interface for BioConductor

  sug: r-bioc-annotationdbi (>= 1.66.0) [niet hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-annotationhub [hppa, ia64, m68k, sh4, x32]

  GNU R client to access AnnotationHub resources

  sug: r-bioc-annotationhub (>= 3.12.0) [niet hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-biobase [hppa, ia64, m68k, sh4, x32]

  base functions for Bioconductor

  sug: r-bioc-biobase (>= 2.64.0) [niet hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-biocstyle [hppa, ia64, m68k, sh4, x32]

  standard styles for vignettes and other Bioconductor documents

  sug: r-bioc-biocstyle (>= 2.32.1) [niet hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-biostrings (>= 2.25.3) [hppa, ia64, m68k, sh4, x32]

  GNU R string objects representing biological sequences

  sug: r-bioc-biostrings (>= 2.72.1) [niet hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-bsgenome [hppa, ia64, m68k, sh4, x32]

  BioConductor infrastructure for Biostrings-based genome data packages

  sug: r-bioc-bsgenome (>= 1.72.0) [niet hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-deseq2 [hppa, ia64, sh4, x32]

  R package for RNA-Seq Differential Expression Analysis

  sug: r-bioc-deseq2 (>= 1.44.0) [niet hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-dexseq [hppa, ia64, m68k, sh4, x32]

  GNU R inference of differential exon usage in RNA-Seq

  sug: r-bioc-dexseq (>= 1.50.0) [niet hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-edger [hppa, ia64, m68k, sh4, x32]

  Empirical analysis of digital gene expression data in R

  sug: r-bioc-edger (>= 4.2.0) [niet hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-genomicalignments [hppa, ia64, m68k, sh4, x32]

  BioConductor representation and manipulation of short genomic alignments

  sug: r-bioc-genomicalignments (>= 1.40.0) [niet hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-genomicfeatures [hppa, ia64, m68k, sh4, x32]

  GNU R tools for making and manipulating transcript centric annotations

  sug: r-bioc-genomicfeatures (>= 1.56.0) [niet hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-gviz [hppa, ia64, m68k, sh4, x32]

  Plotting data and annotation information along genomic coordinates

  sug: r-bioc-gviz (>= 1.48.0) [niet hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-keggrest [hppa, ia64, m68k, sh4, x32]

  GNU R client-side REST access to KEGG

  sug: r-bioc-keggrest (>= 1.44.1) [niet hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-rsamtools (>= 1.13.53) [hppa, ia64, m68k, sh4, x32]

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

  sug: r-bioc-rsamtools (>= 2.20.0) [niet hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-rtracklayer [hppa, ia64, m68k, sh4, x32]

  GNU R interface to genome browsers and their annotation tracks

  sug: r-bioc-rtracklayer (>= 1.64.0) [niet hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-summarizedexperiment (>= 0.1.5) [hppa, ia64, m68k, sh4, x32]

  BioConductor assay container

  sug: r-bioc-summarizedexperiment (>= 1.34.0) [niet hppa, ia64, m68k, sh4, x32]

• sug: r-bioc-variantannotation [hppa, ia64, m68k, sh4, x32]

  BioConductor annotation of genetic variants

  sug: r-bioc-variantannotation (>= 1.50.0) [niet hppa, ia64, m68k, sh4, x32]

• sug: r-cran-digest

  GNU R package for 'hash digest' of R data structures

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-matrix

  GNU R package of classes for dense and sparse matrices

• sug: r-cran-rmarkdown

  convert R markdown documents into a variety of formats

• sug: r-cran-runit

  GNU R package providing unit testing framework

r-bioc-genomicranges downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.56.1+dfsg-1	1.798,6 kB	2.819,0 kB	[overzicht]
amd64	1.56.1+dfsg-1	1.799,1 kB	2.804,0 kB	[overzicht]
arm64	1.56.1+dfsg-1	1.798,7 kB	2.820,0 kB	[overzicht]
hppa (unofficial port)	1.54.1+dfsg-1	1.783,6 kB	2.790,0 kB	[overzicht]
ia64 (unofficial port)	1.54.1+dfsg-1	1.783,4 kB	2.812,0 kB	[overzicht]
m68k (unofficial port)	1.54.1+dfsg-1	1.781,8 kB	2.780,0 kB	[overzicht]
mips64el	1.56.1+dfsg-1	1.797,4 kB	2.825,0 kB	[overzicht]
ppc64 (unofficial port)	1.56.1+dfsg-1	1.799,8 kB	2.884,0 kB	[overzicht]
ppc64el	1.56.1+dfsg-1	1.799,0 kB	2.820,0 kB	[overzicht]
riscv64	1.56.1+dfsg-1	1.798,9 kB	2.796,0 kB	[overzicht]
s390x	1.56.1+dfsg-1	1.798,2 kB	2.804,0 kB	[overzicht]
sh4 (unofficial port)	1.54.1+dfsg-1	1.781,9 kB	2.804,0 kB	[overzicht]
sparc64 (unofficial port)	1.56.1+dfsg-1	1.796,5 kB	3.780,0 kB	[overzicht]
x32 (unofficial port)	1.54.1+dfsg-1	1.784,3 kB	2.788,0 kB	[overzicht]