Pakket: r-bioc-genomicalignments (1.40.0-1 en anderen)

[ Bron: r-bioc-genomicalignments  ]

BioConductor representation and manipulation of short genomic alignments

This BioConductor package provides efficient containers for storing and manipulating short genomic alignments (typically obtained by aligning short reads to a reference genome). This includes read counting, computing the coverage, junction detection, and working with the nucleotide content of the alignments.

Andere aan r-bioc-genomicalignments gerelateerde pakketten

• dep: libc6 (>= 2.16) [x32]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.3) [hppa]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.4) [amd64, m68k, mips64el, ppc64, s390x, sparc64]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.4) [alpha]

• dep: r-api-3.4 [m68k]

  Pakket niet beschikbaar

• dep: r-api-3.5 [sparc64]

  Pakket niet beschikbaar

• dep: r-api-4.0 [niet m68k, sparc64]

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.16 [x32]

  Pakket niet beschikbaar

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  Pakket niet beschikbaar

• dep: r-api-bioc-3.19 [niet hppa, ia64, m68k, sh4, sparc64, x32]

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-api-bioc-3.8 [sparc64]

  Pakket niet beschikbaar

• dep: r-base-core (>= 3.4.3-1) [m68k]

  GNU R core of statistical computation and graphics system

  dep: r-base-core (>= 3.5.2-1) [sparc64]

  dep: r-base-core (>= 4.2.2.20221110-1) [x32]

• dep: r-bioc-biocgenerics (>= 0.15.3) [m68k, sparc64]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.37.0) [hppa, ia64, sh4, x32]

  dep: r-bioc-biocgenerics (>= 0.50.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-biocparallel [hppa, ia64, m68k, sh4, sparc64, x32]

  BioConductor facilities for parallel evaluation

  dep: r-bioc-biocparallel (>= 1.38.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-biostrings (>= 2.37.1) [m68k]

  GNU R string objects representing biological sequences

  dep: r-bioc-biostrings (>= 2.47.6) [sparc64]

  dep: r-bioc-biostrings (>= 2.55.7) [hppa, ia64, sh4, x32]

  dep: r-bioc-biostrings (>= 2.72.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-genomeinfodb (>= 1.13.1) [hppa, ia64, m68k, sh4, sparc64, x32]

  BioConductor utilities for manipulating chromosome identifiers

  dep: r-bioc-genomeinfodb (>= 1.40.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-genomicranges (>= 1.29.14) [m68k]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.33.4) [sparc64]

  dep: r-bioc-genomicranges (>= 1.41.5) [hppa, ia64, sh4, x32]

  dep: r-bioc-genomicranges (>= 1.56.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-iranges (>= 2.11.16) [m68k]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.15.12) [sparc64]

  dep: r-bioc-iranges (>= 2.23.9) [hppa, ia64, sh4, x32]

  dep: r-bioc-iranges (>= 2.38.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-rsamtools (>= 1.21.4) [m68k]

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

  dep: r-bioc-rsamtools (>= 1.31.2) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-rsamtools (>= 2.20.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-s4vectors (>= 0.13.13) [m68k]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.19.11) [sparc64]

  dep: r-bioc-s4vectors (>= 0.27.12) [hppa, ia64, sh4, x32]

  dep: r-bioc-s4vectors (>= 0.42.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-summarizedexperiment (>= 1.34.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

  BioConductor assay container

  dep: r-bioc-summarizedexperiment (>= 1.5.3) [m68k]

  dep: r-bioc-summarizedexperiment (>= 1.9.13) [hppa, ia64, sh4, sparc64, x32]

• rec: r-bioc-shortread (>= 1.24.0)

  GNU R classes and methods for high-throughput short-read sequencing data

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]

  standard styles for vignettes and other Bioconductor documents

  sug: r-bioc-biocstyle (>= 2.32.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-bsgenome [hppa, ia64, m68k, sh4, sparc64, x32]

  BioConductor infrastructure for Biostrings-based genome data packages

  sug: r-bioc-bsgenome (>= 1.72.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-deseq2 [hppa, ia64, sh4, x32]

  R package for RNA-Seq Differential Expression Analysis

  sug: r-bioc-deseq2 (>= 1.44.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-edger [hppa, ia64, m68k, sh4, x32]

  Empirical analysis of digital gene expression data in R

  sug: r-bioc-edger (>= 4.2.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-genomicfeatures [hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R tools for making and manipulating transcript centric annotations

  sug: r-bioc-genomicfeatures (>= 1.56.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-rtracklayer [hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R interface to genome browsers and their annotation tracks

  sug: r-bioc-rtracklayer (>= 1.64.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-shortread [hppa, ia64, m68k, sh4, x32]

  GNU R classes and methods for high-throughput short-read sequencing data

  sug: r-bioc-shortread (>= 1.62.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-cran-knitr [niet hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-runit [niet sparc64]

  GNU R package providing unit testing framework

r-bioc-genomicalignments downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.40.0-1	2.109,1 kB	3.447,0 kB	[overzicht]
amd64	1.40.0-1	2.109,8 kB	3.391,0 kB	[overzicht]
arm64	1.40.0-1	2.109,3 kB	3.447,0 kB	[overzicht]
hppa (unofficial port)	1.38.2-1	2.092,9 kB	2.965,0 kB	[overzicht]
ia64 (unofficial port)	1.38.2-1	2.095,1 kB	3.004,0 kB	[overzicht]
m68k (unofficial port)	1.14.0-1	1.648,5 kB	2.183,0 kB	[overzicht]
mips64el	1.40.0-1	2.107,1 kB	3.453,0 kB	[overzicht]
ppc64 (unofficial port)	1.40.0-1	2.112,2 kB	3.448,0 kB	[overzicht]
ppc64el	1.40.0-1	2.111,0 kB	3.447,0 kB	[overzicht]
riscv64	1.40.0-1	2.109,6 kB	3.379,0 kB	[overzicht]
s390x	1.40.0-1	2.109,0 kB	3.391,0 kB	[overzicht]
sh4 (unofficial port)	1.38.2-1	2.091,9 kB	2.955,0 kB	[overzicht]
sparc64 (unofficial port)	1.18.1-1	2.048,6 kB	2.867,0 kB	[overzicht]
x32 (unofficial port)	1.34.0-1	2.063,0 kB	2.904,0 kB	[overzicht]