Пакет: r-bioc-shortread (1.62.0-1 и други)

[ Източник: r-bioc-shortread  ]

GNU R classes and methods for high-throughput short-read sequencing data

This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.

Други пакети, свързани с r-bioc-shortread

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

  dep: libc6 (>= 2.16) [x32]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.37) [sh4]

  dep: libc6 (>= 2.7) [hppa, m68k, mips64el, ppc64, s390x, sparc64]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6.1-udeb

  dep: libc6.1 (>= 2.7) [alpha]

• dep: libgcc-s1 (>= 3.0) [не hppa, ia64, m68k, sparc64]

  GCC support library

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgcc1 (>= 1:3.0) [sparc64]

  Пакетът не е наличен

• dep: libgcc2 (>= 4.2.1) [m68k]

  Пакетът не е наличен

• dep: libgomp1 (>= 4.2.1) [m68k, sparc64]

  GCC OpenMP (GOMP) support library

• dep: libstdc++6 (>= 11) [не m68k, sparc64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [m68k, sparc64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-3.4 [m68k]

  Пакетът не е наличен

• dep: r-api-3.5 [sparc64]

  Пакетът не е наличен

• dep: r-api-4.0 [не m68k, sparc64]

  виртуален пакет, предлаган от r-base-core

• dep: r-api-bioc-3.16 [x32]

  Пакетът не е наличен

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  Пакетът не е наличен

• dep: r-api-bioc-3.19 [не hppa, ia64, m68k, sh4, sparc64, x32]

  виртуален пакет, предлаган от r-bioc-biocgenerics

• dep: r-api-bioc-3.8 [sparc64]

  Пакетът не е наличен

• dep: r-base-core (>= 3.4.3-1) [m68k]

  GNU R core of statistical computation and graphics system

  dep: r-base-core (>= 3.5.2-1) [sparc64]

  dep: r-base-core (>= 4.2.2.20221110-1) [x32]

• dep: r-bioc-biobase [hppa, ia64, m68k, sh4, sparc64, x32]

  base functions for Bioconductor

  dep: r-bioc-biobase (>= 2.64.0) [не hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-biocgenerics (>= 0.23.3) [hppa, ia64, m68k, sh4, sparc64, x32]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.50.0) [не hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-biocparallel [hppa, ia64, m68k, sh4, sparc64, x32]

  BioConductor facilities for parallel evaluation

  dep: r-bioc-biocparallel (>= 1.38.0) [не hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-biostrings (>= 2.37.1) [m68k]

  GNU R string objects representing biological sequences

  dep: r-bioc-biostrings (>= 2.47.6) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-biostrings (>= 2.72.1) [не hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-genomeinfodb (>= 1.1.19) [m68k]

  BioConductor utilities for manipulating chromosome identifiers

  dep: r-bioc-genomeinfodb (>= 1.15.2) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-genomeinfodb (>= 1.40.1) [не hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-genomicalignments (>= 1.15.6) [hppa, ia64, sh4, sparc64, x32]

  BioConductor representation and manipulation of short genomic alignments

  dep: r-bioc-genomicalignments (>= 1.40.0) [не hppa, ia64, m68k, sh4, sparc64, x32]

  dep: r-bioc-genomicalignments (>= 1.5.4) [m68k]

• dep: r-bioc-genomicranges (>= 1.21.6) [m68k]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.31.8) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-genomicranges (>= 1.56.1) [не hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-iranges (>= 2.13.12) [hppa, ia64, sh4, sparc64, x32]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.3.7) [m68k]

  dep: r-bioc-iranges (>= 2.38.1) [не hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-pwalign (>= 1.0.0-2~0exp1) [не hppa, ia64, m68k, sh4, sparc64, x32]

  Perform pairwise sequence alignments

• dep: r-bioc-rhtslib [hppa, ia64, sh4, x32]

  HTSlib high-throughput sequencing library as GNU R package

  dep: r-bioc-rhtslib (>= 3.0.0) [не hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-rsamtools (>= 1.21.4) [m68k]

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

  dep: r-bioc-rsamtools (>= 1.31.2) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-rsamtools (>= 2.20.0) [не hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-s4vectors (>= 0.13.8) [m68k]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.17.25) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-s4vectors (>= 0.42.1) [не hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-xvector [hppa, ia64, sh4, x32]

  BioConductor representation and manpulation of external sequences

  dep: r-bioc-xvector (>= 0.44.0) [не hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-zlibbioc [hppa, ia64, sh4, x32]

  (Virtual) zlibbioc Bioconductor package

  dep: r-bioc-zlibbioc (>= 1.50.0) [не hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-cran-hwriter

  HTML Writer - Outputs R objects in HTML format

• dep: r-cran-lattice

  GNU R package for 'Trellis' graphics

• dep: r-cran-latticeextra

  GNU R package of additional graphical displays based on lattice

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]

  standard styles for vignettes and other Bioconductor documents

  sug: r-bioc-biocstyle (>= 2.32.1) [не hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-biomart [hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

  sug: r-bioc-biomart (>= 2.60.1) [не hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-genomicfeatures [hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R tools for making and manipulating transcript centric annotations

  sug: r-bioc-genomicfeatures (>= 1.56.0) [не hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-cran-knitr [не hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-runit [не sparc64]

  GNU R package providing unit testing framework

Изтегляне на r-bioc-shortread

Изтегляне за всички налични архитектури

Архитектура	Версия	Големина на пакета	Големина след инсталиране	Файлове
alpha (неофициална архитектура)	1.62.0-1	5 095,0 кБ	8 253,0 кБ	[списък на файловете]
amd64	1.62.0-1	5 095,4 кБ	8 206,0 кБ	[списък на файловете]
arm64	1.62.0-1	5 091,8 кБ	8 252,0 кБ	[списък на файловете]
hppa (неофициална архитектура)	1.60.0-2	5 064,8 кБ	7 527,0 кБ	[списък на файловете]
ia64 (неофициална архитектура)	1.60.0-2	5 072,7 кБ	7 620,0 кБ	[списък на файловете]
m68k (неофициална архитектура)	1.36.0-1	4 189,1 кБ	6 069,0 кБ	[списък на файловете]
mips64el	1.62.0-1	5 088,5 кБ	8 266,0 кБ	[списък на файловете]
ppc64 (неофициална архитектура)	1.62.0-1	5 099,6 кБ	8 320,0 кБ	[списък на файловете]
ppc64el	1.62.0-1	5 097,7 кБ	8 316,0 кБ	[списък на файловете]
riscv64	1.62.0-1	5 094,1 кБ	8 186,0 кБ	[списък на файловете]
s390x	1.62.0-1	5 094,2 кБ	8 216,0 кБ	[списък на файловете]
sh4 (неофициална архитектура)	1.60.0-2	5 066,6 кБ	7 494,0 кБ	[списък на файловете]
sparc64 (неофициална архитектура)	1.40.0-1	4 896,8 кБ	7 343,0 кБ	[списък на файловете]
x32 (неофициална архитектура)	1.56.1-1	5 043,0 кБ	7 479,0 кБ	[списък на файловете]