软件包：r-bioc-shortread（1.62.0-1 以及其他的）

r-bioc-shortread 的相关链接

Debian 的资源：

下载源码包 r-bioc-shortread：

维护小组：

外部的资源：

主页 [bioconductor.org]

相似软件包：

GNU R classes and methods for high-throughput short-read sequencing data

This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.

其他与 r-bioc-shortread 有关的软件包

依赖

推荐

建议

增强

dep: libc6 (>= 2.14) [amd64]

GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb

dep: libc6 (>= 2.16) [x32]

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.27) [riscv64]

dep: libc6 (>= 2.37) [sh4]

dep: libc6 (>= 2.7) [hppa, m68k, mips64el, ppc64, s390x, sparc64]
dep: libc6.1 (>= 2.37) [ia64]

GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6.1-udeb

dep: libc6.1 (>= 2.7) [alpha]
dep: libgcc-s1 (>= 3.0) [除 hppa, ia64, m68k, sparc64]

GCC 支持库

dep: libgcc-s1 (>= 4.2) [ia64]
dep: libgcc-s4 (>= 4.1.1) [hppa]

GCC 支持库
dep: libgcc1 (>= 1:3.0) [sparc64]

软件包暂时不可用
dep: libgcc2 (>= 4.2.1) [m68k]

软件包暂时不可用
dep: libgomp1 (>= 4.2.1) [m68k, sparc64]

GCC OpenMP（GOMP）支持库
dep: libstdc++6 (>= 11) [除 m68k, sparc64]

GNU 标准 C++ 库，第3版

dep: libstdc++6 (>= 5.2) [m68k, sparc64]
dep: libunwind8 [ia64]

library to determine the call-chain of a program - runtime
dep: r-api-3.4 [m68k]

软件包暂时不可用
dep: r-api-3.5 [sparc64]

软件包暂时不可用
dep: r-api-4.0 [除 m68k, sparc64]

本虚包由这些包填实： r-base-core
dep: r-api-bioc-3.16 [x32]

软件包暂时不可用
dep: r-api-bioc-3.18 [hppa, ia64, sh4]

软件包暂时不可用
dep: r-api-bioc-3.19 [除 hppa, ia64, m68k, sh4, sparc64, x32]

本虚包由这些包填实： r-bioc-biocgenerics
dep: r-api-bioc-3.8 [sparc64]

软件包暂时不可用
dep: r-base-core (>= 3.4.3-1) [m68k]

GNU R core of statistical computation and graphics system

dep: r-base-core (>= 3.5.2-1) [sparc64]

dep: r-base-core (>= 4.2.2.20221110-1) [x32]
dep: r-bioc-biobase [hppa, ia64, m68k, sh4, sparc64, x32]

base functions for Bioconductor

dep: r-bioc-biobase (>= 2.64.0) [除 hppa, ia64, m68k, sh4, sparc64, x32]
dep: r-bioc-biocgenerics (>= 0.23.3) [hppa, ia64, m68k, sh4, sparc64, x32]

generic functions for Bioconductor

dep: r-bioc-biocgenerics (>= 0.50.0) [除 hppa, ia64, m68k, sh4, sparc64, x32]
dep: r-bioc-biocparallel [hppa, ia64, m68k, sh4, sparc64, x32]

BioConductor facilities for parallel evaluation

dep: r-bioc-biocparallel (>= 1.38.0) [除 hppa, ia64, m68k, sh4, sparc64, x32]
dep: r-bioc-biostrings (>= 2.37.1) [m68k]

GNU R string objects representing biological sequences

dep: r-bioc-biostrings (>= 2.47.6) [hppa, ia64, sh4, sparc64, x32]

dep: r-bioc-biostrings (>= 2.72.1) [除 hppa, ia64, m68k, sh4, sparc64, x32]
dep: r-bioc-genomeinfodb (>= 1.1.19) [m68k]

BioConductor utilities for manipulating chromosome identifiers

dep: r-bioc-genomeinfodb (>= 1.15.2) [hppa, ia64, sh4, sparc64, x32]

dep: r-bioc-genomeinfodb (>= 1.40.1) [除 hppa, ia64, m68k, sh4, sparc64, x32]
dep: r-bioc-genomicalignments (>= 1.15.6) [hppa, ia64, sh4, sparc64, x32]

BioConductor representation and manipulation of short genomic alignments

dep: r-bioc-genomicalignments (>= 1.40.0) [除 hppa, ia64, m68k, sh4, sparc64, x32]

dep: r-bioc-genomicalignments (>= 1.5.4) [m68k]
dep: r-bioc-genomicranges (>= 1.21.6) [m68k]

BioConductor representation and manipulation of genomic intervals

dep: r-bioc-genomicranges (>= 1.31.8) [hppa, ia64, sh4, sparc64, x32]

dep: r-bioc-genomicranges (>= 1.56.1) [除 hppa, ia64, m68k, sh4, sparc64, x32]
dep: r-bioc-iranges (>= 2.13.12) [hppa, ia64, sh4, sparc64, x32]

GNU R low-level containers for storing sets of integer ranges

dep: r-bioc-iranges (>= 2.3.7) [m68k]

dep: r-bioc-iranges (>= 2.38.1) [除 hppa, ia64, m68k, sh4, sparc64, x32]
dep: r-bioc-pwalign (>= 1.0.0-2~0exp1) [除 hppa, ia64, m68k, sh4, sparc64, x32]

Perform pairwise sequence alignments
dep: r-bioc-rhtslib [hppa, ia64, sh4, x32]

HTSlib high-throughput sequencing library as GNU R package

dep: r-bioc-rhtslib (>= 3.0.0) [除 hppa, ia64, m68k, sh4, sparc64, x32]
dep: r-bioc-rsamtools (>= 1.21.4) [m68k]

GNU R binary alignment (BAM), variant call (BCF), or tabix file import

dep: r-bioc-rsamtools (>= 1.31.2) [hppa, ia64, sh4, sparc64, x32]

dep: r-bioc-rsamtools (>= 2.20.0) [除 hppa, ia64, m68k, sh4, sparc64, x32]
dep: r-bioc-s4vectors (>= 0.13.8) [m68k]

BioConductor S4 implementation of vectors and lists

dep: r-bioc-s4vectors (>= 0.17.25) [hppa, ia64, sh4, sparc64, x32]

dep: r-bioc-s4vectors (>= 0.42.1) [除 hppa, ia64, m68k, sh4, sparc64, x32]
dep: r-bioc-xvector [hppa, ia64, sh4, x32]

BioConductor representation and manpulation of external sequences

dep: r-bioc-xvector (>= 0.44.0) [除 hppa, ia64, m68k, sh4, sparc64, x32]
dep: r-bioc-zlibbioc [hppa, ia64, sh4, x32]

(Virtual) zlibbioc Bioconductor package

dep: r-bioc-zlibbioc (>= 1.50.0) [除 hppa, ia64, m68k, sh4, sparc64, x32]
dep: r-cran-hwriter

HTML Writer - Outputs R objects in HTML format
dep: r-cran-lattice

GNU R package for 'Trellis' graphics
dep: r-cran-latticeextra

GNU R package of additional graphical displays based on lattice
dep: zlib1g (>= 1:1.1.4)

压缩库 - 运行时

rec: r-cran-runit

GNU R package providing unit testing framework

sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]

standard styles for vignettes and other Bioconductor documents

sug: r-bioc-biocstyle (>= 2.32.1) [除 hppa, ia64, m68k, sh4, sparc64, x32]
sug: r-bioc-biomart [hppa, ia64, m68k, sh4, sparc64, x32]

GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

sug: r-bioc-biomart (>= 2.60.1) [除 hppa, ia64, m68k, sh4, sparc64, x32]
sug: r-bioc-genomicfeatures [hppa, ia64, m68k, sh4, sparc64, x32]

GNU R tools for making and manipulating transcript centric annotations

sug: r-bioc-genomicfeatures (>= 1.56.0) [除 hppa, ia64, m68k, sh4, sparc64, x32]
sug: r-cran-knitr [除 hppa, ia64, m68k, sh4, sparc64, x32]

GNU R package for dynamic report generation using Literate Programming
sug: r-cran-runit [除 sparc64]

GNU R package providing unit testing framework

下载 r-bioc-shortread

下载可用于所有硬件架构的
硬件架构	版本	软件包大小	安装后大小	文件
alpha （非官方移植版）	1.62.0-1	5,095.0 kB	8,253.0 kB	[文件列表]
amd64	1.62.0-1	5,095.4 kB	8,206.0 kB	[文件列表]
arm64	1.62.0-1	5,091.8 kB	8,252.0 kB	[文件列表]
hppa （非官方移植版）	1.60.0-2	5,064.8 kB	7,527.0 kB	[文件列表]
ia64 （非官方移植版）	1.60.0-2	5,072.7 kB	7,620.0 kB	[文件列表]
m68k （非官方移植版）	1.36.0-1	4,189.1 kB	6,069.0 kB	[文件列表]
mips64el	1.62.0-1	5,088.5 kB	8,266.0 kB	[文件列表]
ppc64 （非官方移植版）	1.62.0-1	5,099.6 kB	8,320.0 kB	[文件列表]
ppc64el	1.62.0-1	5,097.7 kB	8,316.0 kB	[文件列表]
riscv64	1.62.0-1	5,094.1 kB	8,186.0 kB	[文件列表]
s390x	1.62.0-1	5,094.2 kB	8,216.0 kB	[文件列表]
sh4 （非官方移植版）	1.60.0-2	5,066.6 kB	7,494.0 kB	[文件列表]
sparc64 （非官方移植版）	1.40.0-1	4,896.8 kB	7,343.0 kB	[文件列表]
x32 （非官方移植版）	1.56.1-1	5,043.0 kB	7,479.0 kB	[文件列表]