Pakket: r-bioc-rsamtools (2.20.0+dfsg-1 en anderen)

[ Bron: r-bioc-rsamtools  ]

GNU R binary alignment (BAM), variant call (BCF), or tabix file import

This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities for manipulating SAM (Sequence Alignment / Map), binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.

Andere aan r-bioc-rsamtools gerelateerde pakketten

• dep: libbz2-1.0 [niet hppa, m68k, sh4, sparc64, x32]

  high-quality block-sorting file compressor library - runtime

• dep: libc6 (>= 2.15) [m68k, sparc64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.34) [niet alpha, ia64, m68k, sh4, sparc64]

  dep: libc6 (>= 2.37) [sh4]

• dep: libc6.1 (>= 2.34) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libcurl4 (>= 7.18.0) [hppa, ia64, sh4, x32]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libcurl4t64 (>= 7.18.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, mips64el, ppc64, ppc64el, s390x, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64]

  dep: libgcc-s1 (>= 4.2) [ia64, sh4]

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libgcc1 (>= 1:3.4) [sparc64]

  Pakket niet beschikbaar

• dep: libgcc2 (>= 4.2.1) [m68k]

  Pakket niet beschikbaar

• dep: libgomp1 (>= 4.2.1) [m68k, sparc64]

  GCC OpenMP (GOMP) support library

• dep: liblzma5 (>= 5.1.1alpha+20120614) [niet hppa, m68k, sh4, sparc64, x32]

  XZ-format compression library

• dep: libstdc++6 (>= 11) [niet m68k, sparc64]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 5.2) [m68k, sparc64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: r-api-3.4 [m68k]

  Pakket niet beschikbaar

• dep: r-api-3.5 [sparc64]

  Pakket niet beschikbaar

• dep: r-api-4.0 [niet m68k, sparc64]

  virtueel pakket geboden door r-base-core

• dep: r-api-bioc-3.16 [x32]

  Pakket niet beschikbaar

• dep: r-api-bioc-3.18 [hppa, ia64, sh4]

  Pakket niet beschikbaar

• dep: r-api-bioc-3.19 [niet hppa, ia64, m68k, sh4, sparc64, x32]

  virtueel pakket geboden door r-bioc-biocgenerics

• dep: r-api-bioc-3.8 [sparc64]

  Pakket niet beschikbaar

• dep: r-base-core (>= 3.4.2-2) [m68k]

  GNU R core of statistical computation and graphics system

  dep: r-base-core (>= 3.5.2-1) [sparc64]

  dep: r-base-core (>= 4.2.2.20221110-1) [x32]

• dep: r-bioc-biocgenerics (>= 0.1.3) [m68k]

  generic functions for Bioconductor

  dep: r-bioc-biocgenerics (>= 0.25.1) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-biocgenerics (>= 0.50.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-biocparallel [hppa, ia64, m68k, sh4, sparc64, x32]

  BioConductor facilities for parallel evaluation

  dep: r-bioc-biocparallel (>= 1.38.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-biostrings (>= 2.37.1) [m68k]

  GNU R string objects representing biological sequences

  dep: r-bioc-biostrings (>= 2.47.6) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-biostrings (>= 2.72.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-genomeinfodb (>= 1.1.3) [hppa, ia64, m68k, sh4, sparc64, x32]

  BioConductor utilities for manipulating chromosome identifiers

  dep: r-bioc-genomeinfodb (>= 1.40.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-genomicranges (>= 1.21.6) [m68k]

  BioConductor representation and manipulation of genomic intervals

  dep: r-bioc-genomicranges (>= 1.31.8) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-genomicranges (>= 1.56.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-iranges (>= 2.13.12) [hppa, ia64, sh4, sparc64, x32]

  GNU R low-level containers for storing sets of integer ranges

  dep: r-bioc-iranges (>= 2.3.7) [m68k]

  dep: r-bioc-iranges (>= 2.38.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-rhtslib (>= 1.99.3) [hppa, ia64, sh4, x32]

  HTSlib high-throughput sequencing library as GNU R package

  dep: r-bioc-rhtslib (>= 3.0.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-s4vectors (>= 0.13.8) [m68k]

  BioConductor S4 implementation of vectors and lists

  dep: r-bioc-s4vectors (>= 0.17.25) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-s4vectors (>= 0.42.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-xvector (>= 0.15.1) [m68k]

  BioConductor representation and manpulation of external sequences

  dep: r-bioc-xvector (>= 0.19.7) [hppa, ia64, sh4, sparc64, x32]

  dep: r-bioc-xvector (>= 0.44.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-bioc-zlibbioc [hppa, ia64, sh4, sparc64, x32]

  (Virtual) zlibbioc Bioconductor package

  dep: r-bioc-zlibbioc (>= 1.50.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• dep: r-cran-bitops

  GNU R package implementing bitwise operations

• dep: zlib1g (>= 1:1.2.3.3) [niet hppa, sh4, x32]

  compressiebibliotheek - programma's

• rec: r-bioc-shortread

  GNU R classes and methods for high-throughput short-read sequencing data

• rec: r-cran-runit

  GNU R package providing unit testing framework

• sug: r-bioc-biocstyle [hppa, ia64, sh4, x32]

  standard styles for vignettes and other Bioconductor documents

  sug: r-bioc-biocstyle (>= 2.32.1) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-genomicalignments [hppa, ia64, m68k, sh4, sparc64, x32]

  BioConductor representation and manipulation of short genomic alignments

  sug: r-bioc-genomicalignments (>= 1.40.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-genomicfeatures [hppa, ia64, m68k, sh4, sparc64, x32]

  GNU R tools for making and manipulating transcript centric annotations

  sug: r-bioc-genomicfeatures (>= 1.56.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-bioc-shortread (>= 1.19.10) [hppa, ia64, m68k, sh4, x32]

  GNU R classes and methods for high-throughput short-read sequencing data

  sug: r-bioc-shortread (>= 1.62.0) [niet hppa, ia64, m68k, sh4, sparc64, x32]

• sug: r-cran-knitr [niet m68k, sparc64, x32]

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-runit [niet sparc64]

  GNU R package providing unit testing framework

r-bioc-rsamtools downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	2.20.0+dfsg-1	3.509,6 kB	5.837,0 kB	[overzicht]
amd64	2.20.0+dfsg-1	3.515,2 kB	5.655,0 kB	[overzicht]
arm64	2.20.0+dfsg-1	3.481,1 kB	5.644,0 kB	[overzicht]
hppa (unofficial port)	2.18.0+dfsg-1	3.506,9 kB	5.731,0 kB	[overzicht]
ia64 (unofficial port)	2.18.0+dfsg-1+b1	3.636,0 kB	6.843,0 kB	[overzicht]
m68k (unofficial port)	1.30.0-1	3.206,0 kB	5.170,0 kB	[overzicht]
mips64el	2.20.0+dfsg-1	3.470,0 kB	5.831,0 kB	[overzicht]
ppc64 (unofficial port)	2.20.0+dfsg-1	3.554,1 kB	6.231,0 kB	[overzicht]
ppc64el	2.20.0+dfsg-1	3.564,3 kB	6.092,0 kB	[overzicht]
riscv64	2.20.0+dfsg-1	3.527,0 kB	5.435,0 kB	[overzicht]
s390x	2.20.0+dfsg-1	3.529,0 kB	5.795,0 kB	[overzicht]
sh4 (unofficial port)	2.18.0+dfsg-1	3.552,9 kB	5.453,0 kB	[overzicht]
sparc64 (unofficial port)	1.34.1-1	3.424,1 kB	5.736,0 kB	[overzicht]
x32 (unofficial port)	2.14.0-1	3.666,4 kB	5.700,0 kB	[overzicht]