Pakket: murasaki (1.68.6-14 en anderen)

[ Bron: murasaki  ]

homology detection tool across multiple large genomes

Murasaki is a scalable and fast, language theory-based homology detection tool across multiple large genomes. It enable whole-genome scale multiple genome global alignments. Supports unlimited length gapped-seed patterns and unique TF-IDF based filtering.

Murasaki is an anchor alignment software, which is

 * exteremely fast (17 CPU hours for whole Human x Mouse genome (with
   40 nodes: 52 wall minutes))
 * scalable (Arbitrarily parallelizable across multiple nodes using MPI.
   Even a single node with 16GB of ram can handle over 1Gbp of sequence.)
 * unlimited pattern length
 * repeat tolerant
 * intelligent noise reduction

Andere aan murasaki gerelateerde pakketten

• dep: libboost-filesystem1.83.0 (>= 1.83.0)

  filesystem operations (portable paths, iteration over directories, etc) in C++

• dep: libboost-iostreams1.83.0 (>= 1.83.0)

  Boost.Iostreams Library

• dep: libc6 (>= 2.38) [niet alpha, ia64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, ppc64, ppc64el, s390x, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libstdc++6 (>= 13.1) [ia64, m68k]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [niet ia64, m68k]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: murasaki-common

  homology detection tool across multiple large genomes (common files)

murasaki downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	1.68.6-14+b1	597,4 kB	4.978,0 kB	[overzicht]
amd64	1.68.6-14+b1	629,6 kB	4.400,0 kB	[overzicht]
arm64	1.68.6-14+b1	543,3 kB	4.319,0 kB	[overzicht]
armel	1.68.6-14	452,9 kB	3.326,0 kB	[overzicht]
armhf	1.68.6-14	462,8 kB	2.350,0 kB	[overzicht]
hppa (unofficial port)	1.68.6-14	586,1 kB	3.991,0 kB	[overzicht]
i386	1.68.6-14	638,5 kB	4.166,0 kB	[overzicht]
ia64 (unofficial port)	1.68.6-13+b5	658,9 kB	8.435,0 kB	[overzicht]
m68k (unofficial port)	1.68.6-14	483,4 kB	3.566,0 kB	[overzicht]
mips64el	1.68.6-14+b1	596,1 kB	5.866,0 kB	[overzicht]
ppc64 (unofficial port)	1.68.6-14+b1	603,4 kB	5.792,0 kB	[overzicht]
ppc64el	1.68.6-14+b1	606,8 kB	5.600,0 kB	[overzicht]
riscv64	1.68.6-14+b1	584,6 kB	3.203,0 kB	[overzicht]
s390x	1.68.6-14+b1	606,9 kB	4.827,0 kB	[overzicht]
sh4 (unofficial port)	1.68.6-14	515,2 kB	3.657,0 kB	[overzicht]
sparc64 (unofficial port)	1.68.6-14+b1	506,6 kB	13.459,0 kB	[overzicht]
x32 (unofficial port)	1.68.6-14	602,5 kB	3.978,0 kB	[overzicht]