Pakket: centrifuge (1.0.3-8)

[ Bron: centrifuge  ]

rapid and memory-efficient system for classification of DNA sequences

Centrifuge is a very rapid and memory-efficient system for the classification of DNA sequences from microbial samples, with better sensitivity than and comparable accuracy to other leading systems. The system uses a novel indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized specifically for the metagenomic classification problem. Centrifuge requires a relatively small index (e.g., 4.3 GB for ~4,100 bacterial genomes) yet provides very fast classification speed, allowing it to process a typical DNA sequencing run within an hour. Together these advances enable timely and accurate analysis of large metagenomics data sets on conventional desktop computers.

Andere aan centrifuge gerelateerde pakketten

• dep: hisat2

  graph-based alignment of short nucleotide reads to many genomes

• dep: jellyfish

  count k-mers in DNA sequences

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, i386]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [i386]

• dep: libstdc++6 (>= 9)

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

centrifuge downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	525,0 kB	1.669,0 kB	[overzicht]
arm64	492,5 kB	1.463,0 kB	[overzicht]
armel	489,3 kB	1.491,0 kB	[overzicht]
armhf	483,2 kB	1.171,0 kB	[overzicht]
i386	545,5 kB	1.799,0 kB	[overzicht]
mips64el	523,3 kB	1.805,0 kB	[overzicht]
ppc64el	551,4 kB	1.787,0 kB	[overzicht]