Pakket: blixem (4.44.1+dfsg-7.1 en anderen)

[ Bron: seqtools  ]

interactive browser of sequence alignments

Blixem is an interactive browser of sequence alignments that have been stacked up in a "master-slave" multiple alignment; it is not a 'true' multiple alignment but a 'one-to-many' alignment.

 * Overview section showing the positions of genes and alignments around
   the alignment window
 * Detail section showing the actual alignment of protein or nucleotide
   sequences to the genomic DNA sequence.
 * View alignments against both strands of the reference sequence.
 * View sequences in nucleotide or protein mode; in protein mode, Blixem
   will display the three-frame translation of the reference sequence.
 * Residues are highlighted in different colours depending on whether
   they are an exact match, conserved substitution or mismatch.
 * Gapped alignments are supported, with insertions and deletions being
   highlighted in the match sequence.
 * Matches can be sorted and filtered.
 * SNPs and other variations can be highlighted in the reference
   sequence.
 * Poly(A) tails can be displayed and poly(A) signals highlighted in the
   reference sequence.

Tags: Interface Toolkit: GTK

Andere aan blixem gerelateerde pakketten

• dep: libc6 (>= 2.38) [niet alpha, ia64, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libcairo2 (>= 1.2.4)

  Cairo 2D vector graphics library

• dep: libcurl4 (>= 7.16.2) [ia64]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libcurl4t64 (>= 7.16.2) [niet ia64]

  easy-to-use client-side URL transfer library (OpenSSL flavour)

• dep: libgbtools0t64 (>= 4.44.1+dfsg)

  library for visualising sequence alignments

• dep: libgcc-s1 (>= 3.0) [niet armel, armhf, hppa, ia64, m68k]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libglib2.0-0t64 (>= 2.75.3) [ia64]

  GLib library of C routines

  dep: libglib2.0-0t64 (>= 2.76.0) [niet ia64]

• dep: libgtk2.0-0t64 (>= 2.14.0)

  GTK graphical user interface library - old version

• dep: libpango-1.0-0 (>= 1.14.0)

  Layout and rendering of internationalized text

• dep: libsqlite3-0 (>= 3.5.9)

  SQLite 3 shared library

• dep: libstdc++6 (>= 5.2)

  GNU Standard C++ Library v3

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

blixem downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	4.44.1+dfsg-7.1+b1	1.327,9 kB	2.430,0 kB	[overzicht]
amd64	4.44.1+dfsg-7.1+b3	1.348,6 kB	2.220,0 kB	[overzicht]
arm64	4.44.1+dfsg-7.1+b3	1.312,6 kB	2.292,0 kB	[overzicht]
armel	4.44.1+dfsg-7.1+b3	1.292,3 kB	2.160,0 kB	[overzicht]
armhf	4.44.1+dfsg-7.1+b3	1.298,2 kB	1.904,0 kB	[overzicht]
hppa (unofficial port)	4.44.1+dfsg-7.1+b2	1.329,3 kB	2.182,0 kB	[overzicht]
i386	4.44.1+dfsg-7.1+b3	1.360,9 kB	2.356,0 kB	[overzicht]
ia64 (unofficial port)	4.44.1+dfsg-7.1	1.378,9 kB	3.243,0 kB	[overzicht]
m68k (unofficial port)	4.44.1+dfsg-7.1+b2	1.336,6 kB	2.246,0 kB	[overzicht]
mips64el	4.44.1+dfsg-7.1+b3	1.350,4 kB	2.634,0 kB	[overzicht]
ppc64 (unofficial port)	4.44.1+dfsg-7.1+b2	1.346,4 kB	2.676,0 kB	[overzicht]
ppc64el	4.44.1+dfsg-7.1+b3	1.348,3 kB	2.548,0 kB	[overzicht]
riscv64	4.44.1+dfsg-7.1+b3	1.335,7 kB	2.016,0 kB	[overzicht]
s390x	4.44.1+dfsg-7.1+b3	1.322,5 kB	2.270,0 kB	[overzicht]
sh4 (unofficial port)	4.44.1+dfsg-7.1+b2	1.359,4 kB	2.228,0 kB	[overzicht]
sparc64 (unofficial port)	4.44.1+dfsg-7.1+b2	1.294,2 kB	3.224,0 kB	[overzicht]
x32 (unofficial port)	4.44.1+dfsg-7.1+b2	1.347,9 kB	2.164,0 kB	[overzicht]