Pakket: nanopolish (0.13.2-3)

[ Bron: nanopolish  ]

consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

Andere aan nanopolish gerelateerde pakketten

• dep: libc6 (>= 2.29)

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

• dep: libgcc-s1 (>= 3.3.1) [niet armel, armhf, mipsel, ppc64el]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [mipsel]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhdf5-103-1

  HDF5 C runtime files - serial version

• dep: libhts3 (>= 1.10)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 9)

  GNU Standard C++ Library v3

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4) [niet arm64]

  compressiebibliotheek - programma's

  dep: zlib1g (>= 1:1.2.3.3) [arm64]

• rec: python3-biopython

  Python3 library for bioinformatics

• rec: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• sug: make

  utility for directing compilation

• sug: perl

  Larry Wall's Practical Extraction and Report Language

nanopolish downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Pakketgrootte	Geïnstalleerde grootte	Bestanden
amd64	2.199,8 kB	9.539,0 kB	[overzicht]
arm64	2.130,2 kB	9.334,0 kB	[overzicht]
armel	2.126,7 kB	9.405,0 kB	[overzicht]
armhf	2.141,1 kB	8.985,0 kB	[overzicht]
i386	2.247,0 kB	9.797,0 kB	[overzicht]
mips64el	2.140,4 kB	9.757,0 kB	[overzicht]
mipsel	2.163,9 kB	9.796,0 kB	[overzicht]
ppc64el	2.202,2 kB	9.795,0 kB	[overzicht]
s390x	2.134,3 kB	9.626,0 kB	[overzicht]