Package: tiddit (3.6.1+dfsg-2 and others)

[ Source: tiddit  ]

structural variant calling

TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs.

TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report.

Other Packages Related to tiddit

• dep: libbamtools2.5.1 (>= 2.5.1+dfsg) [hppa, ppc64]

  Package not available

• dep: libc6 (>= 2.16) [x32]

  Libreria C GNU: librerie condivise
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.3.4) [hppa]

  dep: libc6 (>= 2.4) [amd64, armel, armhf, i386, m68k, mips64el, ppc64]

  dep: libc6 (>= 2.40) [loong64, sh4]

• dep: libc6.1 (>= 2.1.3) [alpha]

  Libreria C GNU: librerie condivise
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [ppc64]

  libreria di supporto a GCC

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  libreria di supporto a GCC

• dep: libstdc++6 (>= 11) [hppa, ppc64]

  libreria GNU Standard C++, versione 3

• dep: python3

  linguaggio interattivo di alto livello orientato agli oggetti (versione python3 predefinita)

  dep: python3 (<< 3.11) [hppa, ppc64]

  dep: python3 (<< 3.13) [ia64]

  dep: python3 (<< 3.14) [not hppa, ia64, ppc64]

  dep: python3 (>= 3.10~) [hppa, ppc64]

  dep: python3 (>= 3.11~) [ia64]

  dep: python3 (>= 3.13~) [not hppa, ia64, ppc64]

• dep: python3-joblib [not hppa, ppc64]

  strumenti per fornire pipeline leggere in Python

• dep: python3-numpy [not hppa, ppc64]

  libreria Python per calcoli numerici (Python 3)

• dep: python3-numpy2-abi0 [not hppa, ia64, ppc64]

  virtual package provided by python3-numpy

  or python3-numpy-abi9

  virtual package provided by python3-numpy

• dep: python3-pysam [not hppa, ppc64]

  interfaccia al formato SAM/BAM per allineamento e mappatura di sequenze (Python 3)

Download tiddit

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	3.6.1+dfsg-2+b2	272.0 kB	1,557.0 kB	[list of files]
amd64	3.6.1+dfsg-2+b1	322.3 kB	1,376.0 kB	[list of files]
arm64	3.6.1+dfsg-2+b1	255.1 kB	1,292.0 kB	[list of files]
armel	3.6.1+dfsg-2+b1	267.6 kB	1,412.0 kB	[list of files]
armhf	3.6.1+dfsg-2+b1	273.3 kB	1,156.0 kB	[list of files]
hppa (unofficial port)	2.12.2+dfsg-1+b1	228.8 kB	906.0 kB	[list of files]
i386	3.6.1+dfsg-2+b1	299.6 kB	1,368.0 kB	[list of files]
ia64 (unofficial port)	3.6.1+dfsg-1+b1	478.9 kB	3,466.0 kB	[list of files]
loong64 (unofficial port)	3.6.1+dfsg-2+b2	275.6 kB	1,484.0 kB	[list of files]
m68k (unofficial port)	3.6.1+dfsg-2+b1	241.6 kB	1,130.0 kB	[list of files]
mips64el	3.6.1+dfsg-2+b1	236.9 kB	1,511.0 kB	[list of files]
ppc64 (unofficial port)	2.12.2+dfsg-1+b1	225.3 kB	1,232.0 kB	[list of files]
ppc64el	3.6.1+dfsg-2+b1	277.3 kB	1,548.0 kB	[list of files]
riscv64	3.6.1+dfsg-2+b1	295.9 kB	964.0 kB	[list of files]
sh4 (unofficial port)	3.6.1+dfsg-2+b1	389.4 kB	1,284.0 kB	[list of files]
x32 (unofficial port)	3.6.1+dfsg-2+b1	335.3 kB	1,316.0 kB	[list of files]