Pakket: tiddit (3.6.1+dfsg-2 en anderen)

[ Bron: tiddit  ]

structural variant calling

TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs.

TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report.

Andere aan tiddit gerelateerde pakketten

• dep: libbamtools2.5.1 (>= 2.5.1+dfsg) [hppa, ppc64]

  Pakket niet beschikbaar

• dep: libc6 (>= 2.16) [x32]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.3.4) [hppa]

  dep: libc6 (>= 2.4) [amd64, armel, armhf, i386, m68k, mips64el, ppc64]

  dep: libc6 (>= 2.40) [loong64, sh4]

• dep: libc6.1 (>= 2.1.3) [alpha]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [ppc64]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libstdc++6 (>= 11) [hppa, ppc64]

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.11) [hppa, ppc64]

  dep: python3 (<< 3.13) [ia64]

  dep: python3 (<< 3.14) [niet hppa, ia64, ppc64]

  dep: python3 (>= 3.10~) [hppa, ppc64]

  dep: python3 (>= 3.11~) [ia64]

  dep: python3 (>= 3.13~) [niet hppa, ia64, ppc64]

• dep: python3-joblib [niet hppa, ppc64]

  tools to provide lightweight pipelining in Python

• dep: python3-numpy [niet hppa, ppc64]

  Python library for numerical computations (Python 3)

• dep: python3-numpy2-abi0 [niet hppa, ia64, ppc64]

  virtueel pakket geboden door python3-numpy

  of python3-numpy-abi9

  virtueel pakket geboden door python3-numpy

• dep: python3-pysam [niet hppa, ppc64]

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

tiddit downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	3.6.1+dfsg-2+b2	272,0 kB	1.557,0 kB	[overzicht]
amd64	3.6.1+dfsg-2+b1	322,3 kB	1.376,0 kB	[overzicht]
arm64	3.6.1+dfsg-2+b1	255,1 kB	1.292,0 kB	[overzicht]
armel	3.6.1+dfsg-2+b1	267,6 kB	1.412,0 kB	[overzicht]
armhf	3.6.1+dfsg-2+b1	273,3 kB	1.156,0 kB	[overzicht]
hppa (unofficial port)	2.12.2+dfsg-1+b1	228,8 kB	906,0 kB	[overzicht]
i386	3.6.1+dfsg-2+b1	299,6 kB	1.368,0 kB	[overzicht]
ia64 (unofficial port)	3.6.1+dfsg-1+b1	478,9 kB	3.466,0 kB	[overzicht]
loong64 (unofficial port)	3.6.1+dfsg-2+b2	275,6 kB	1.484,0 kB	[overzicht]
m68k (unofficial port)	3.6.1+dfsg-2+b1	241,6 kB	1.130,0 kB	[overzicht]
mips64el	3.6.1+dfsg-2+b1	236,9 kB	1.511,0 kB	[overzicht]
ppc64 (unofficial port)	2.12.2+dfsg-1+b1	225,3 kB	1.232,0 kB	[overzicht]
ppc64el	3.6.1+dfsg-2+b1	277,3 kB	1.548,0 kB	[overzicht]
riscv64	3.6.1+dfsg-2+b1	295,9 kB	964,0 kB	[overzicht]
sh4 (unofficial port)	3.6.1+dfsg-2+b1	389,4 kB	1.284,0 kB	[overzicht]
x32 (unofficial port)	3.6.1+dfsg-2+b1	335,3 kB	1.316,0 kB	[overzicht]