Package: tiddit (3.6.1+dfsg-2 and others)

[ Source: tiddit  ]

structural variant calling

TIDDIT is a tool to used to identify chromosomal rearrangements using Mate Pair or Paired End sequencing data. TIDDIT identifies intra and inter- chromosomal translocations, deletions, tandem-duplications and inversions, using supplementary alignments as well as discordant pairs.

TIDDIT has two analysis modules. The sv mode, which is used to search for structural variants. And the cov mode that analyse the read depth of a bam file and generates a coverage report.

Other Packages Related to tiddit

• dep: libbamtools2.5.1 (>= 2.5.1+dfsg) [hppa, ppc64]

  Package not available

• dep: libc6 (>= 2.16) [x32]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.3.4) [hppa]

  dep: libc6 (>= 2.4) [amd64, armel, armhf, i386, m68k, mips64el, ppc64]

  dep: libc6 (>= 2.40) [sh4]

• dep: libc6.1 (>= 2.1.3) [alpha]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6.1-udeb

  dep: libc6.1 (>= 2.37) [ia64]

• dep: libgcc-s1 (>= 3.0) [ppc64]

  GCC támogató programkönyvtár

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC támogató programkönyvtár

• dep: libstdc++6 (>= 11) [hppa, ppc64]

  GNU Standard C++ Library v3

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.11) [hppa, ppc64]

  dep: python3 (<< 3.13) [ia64]

  dep: python3 (<< 3.14) [not hppa, ia64, ppc64]

  dep: python3 (>= 3.10~) [hppa, ppc64]

  dep: python3 (>= 3.11~) [ia64]

  dep: python3 (>= 3.12~) [not hppa, ia64, ppc64]

• dep: python3-joblib [not hppa, ppc64]

  tools to provide lightweight pipelining in Python

• dep: python3-numpy [not hppa, ppc64]

  Python library for numerical computations (Python 3)

• dep: python3-numpy2-abi0 [not hppa, ia64, ppc64]

  virtual package provided by python3-numpy

  or python3-numpy-abi9

  virtual package provided by python3-numpy

• dep: python3-pysam [not hppa, ppc64]

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

Download tiddit

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	3.6.1+dfsg-2+b1	422.0 kB	3,067.0 kB	[list of files]
amd64	3.6.1+dfsg-2	483.4 kB	2,559.0 kB	[list of files]
arm64	3.6.1+dfsg-2	345.9 kB	2,407.0 kB	[list of files]
armel	3.6.1+dfsg-2	375.0 kB	2,519.0 kB	[list of files]
armhf	3.6.1+dfsg-2	392.1 kB	1,751.0 kB	[list of files]
hppa (unofficial port)	2.12.2+dfsg-1+b1	228.8 kB	906.0 kB	[list of files]
i386	3.6.1+dfsg-2	417.1 kB	2,543.0 kB	[list of files]
ia64 (unofficial port)	3.6.1+dfsg-1+b1	478.9 kB	3,466.0 kB	[list of files]
m68k (unofficial port)	3.6.1+dfsg-2	363.3 kB	2,099.0 kB	[list of files]
mips64el	3.6.1+dfsg-2	326.5 kB	2,710.0 kB	[list of files]
ppc64 (unofficial port)	2.12.2+dfsg-1+b1	225.3 kB	1,232.0 kB	[list of files]
ppc64el	3.6.1+dfsg-2	366.7 kB	2,983.0 kB	[list of files]
riscv64	3.6.1+dfsg-2	403.9 kB	1,743.0 kB	[list of files]
sh4 (unofficial port)	3.6.1+dfsg-2	568.8 kB	2,391.0 kB	[list of files]
x32 (unofficial port)	3.6.1+dfsg-2	517.7 kB	2,467.0 kB	[list of files]