Package: proteinortho (6.3.1+dfsg-1 and others)

[ Source: proteinortho  ]

Detection of (Co-)orthologs in large-scale protein analysis

Proteinortho is a stand-alone tool that is geared towards large datasets and makes use of distributed computing techniques when run on multi-core hardware. It implements an extended version of the reciprocal best alignment heuristic. Proteinortho was applied to compute orthologous proteins in the complete set of all 717 eubacterial genomes available at NCBI at the beginning of 2009. Authors succeeded identifying thirty proteins present in 99% of all bacterial proteomes.

Other Packages Related to proteinortho

• dep: diamond-aligner [alpha, hppa, m68k, sh4, sparc64]

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  dep: diamond-aligner (>= 2.0.10~) [not alpha, hppa, m68k, sh4, sparc64]

• dep: libblas3 [sparc64]

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  or libblas.so.3

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• dep: libc6 (>= 2.32) [m68k, sh4]

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  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.34) [amd64, ppc64, ppc64el, riscv64, s390x, x32]

  dep: libc6 (>= 2.38) [arm64]

  dep: libc6 (>= 2.7) [hppa, sparc64]

• dep: libc6.1 (>= 2.37) [ia64]

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  dep: libc6.1 (>= 2.7) [alpha]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, ppc64, ppc64el, s390x, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgcc1 (>= 1:3.4) [sparc64]

  Package not available

• dep: libgomp1 (>= 4.9) [not alpha, hppa, m68k, sh4, sparc64]

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  dep: libgomp1 (>= 6) [alpha, hppa, m68k, sh4, sparc64]

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Download proteinortho

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	6.0.31+dfsg-1	210.9 kB	832.0 kB	[list of files]
amd64	6.3.1+dfsg-1	341.5 kB	1,177.0 kB	[list of files]
arm64	6.3.1+dfsg-1+b1	320.8 kB	1,182.0 kB	[list of files]
hppa (unofficial port)	6.0.31+dfsg-2	207.9 kB	780.0 kB	[list of files]
ia64 (unofficial port)	6.3.1+dfsg-1	397.3 kB	1,577.0 kB	[list of files]
m68k (unofficial port)	6.0.31+dfsg-2	207.1 kB	771.0 kB	[list of files]
ppc64 (unofficial port)	6.3.1+dfsg-1	337.2 kB	1,245.0 kB	[list of files]
ppc64el	6.3.1+dfsg-1	334.7 kB	1,245.0 kB	[list of files]
riscv64	6.3.1+dfsg-1	341.6 kB	1,033.0 kB	[list of files]
s390x	6.3.1+dfsg-1	310.6 kB	1,125.0 kB	[list of files]
sh4 (unofficial port)	6.0.31+dfsg-2	221.7 kB	764.0 kB	[list of files]
sparc64 (unofficial port)	6.0.8+dfsg-1	187.0 kB	834.0 kB	[list of files]
x32 (unofficial port)	6.3.1+dfsg-1	346.8 kB	1,162.0 kB	[list of files]