Pakket: proteinortho (6.3.1+dfsg-1 en anderen)

[ Bron: proteinortho  ]

Detection of (Co-)orthologs in large-scale protein analysis

Proteinortho is a stand-alone tool that is geared towards large datasets and makes use of distributed computing techniques when run on multi-core hardware. It implements an extended version of the reciprocal best alignment heuristic. Proteinortho was applied to compute orthologous proteins in the complete set of all 717 eubacterial genomes available at NCBI at the beginning of 2009. Authors succeeded identifying thirty proteins present in 99% of all bacterial proteomes.

Andere aan proteinortho gerelateerde pakketten

• dep: diamond-aligner [alpha, hppa, m68k, sh4, sparc64]

  accelerated BLAST compatible local sequence aligner

  dep: diamond-aligner (>= 2.0.10~) [niet alpha, hppa, m68k, sh4, sparc64]

• dep: libblas3 [sparc64]

  Basic Linear Algebra Reference implementations, shared library

  of libblas.so.3

  virtueel pakket geboden door libatlas3-base, libblas3, libblis4-openmp, libblis4-pthread, libblis4-serial, libopenblas0-openmp, libopenblas0-pthread, libopenblas0-serial

• dep: libc6 (>= 2.32) [m68k, sh4]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6-udeb

  dep: libc6 (>= 2.34) [amd64, ppc64, ppc64el, riscv64, s390x, x32]

  dep: libc6 (>= 2.38) [arm64]

  dep: libc6 (>= 2.7) [hppa, sparc64]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Bibliotheek: Gedeelde bibliotheken
  Ook een virtueel pakket geboden door: libc6.1-udeb

  dep: libc6.1 (>= 2.7) [alpha]

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, ppc64, ppc64el, s390x, x32]

  GCC support bibliotheek

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support bibliotheek

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support bibliotheek

• dep: libgcc1 (>= 1:3.4) [sparc64]

  Pakket niet beschikbaar

• dep: libgomp1 (>= 4.9) [niet alpha, hppa, m68k, sh4, sparc64]

  GCC OpenMP (GOMP) support library

  dep: libgomp1 (>= 6) [alpha, hppa, m68k, sh4, sparc64]

• dep: liblapack3

  Library of linear algebra routines 3 - shared version

• dep: libstdc++6 (>= 11) [hppa, m68k, sh4]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 13.1) [niet alpha, hppa, m68k, sh4, sparc64]

  dep: libstdc++6 (>= 5.2) [alpha, sparc64]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: ncbi-blast+

  next generation suite of BLAST sequence search tools

• dep: perl [niet sparc64]

  Larry Wall's Practical Extraction and Report Language

• dep: procps [niet sparc64]

  /proc file system utilities

• dep: python3

  interactive high-level object-oriented language (default python3 version)

proteinortho downloaden

Pakket downloaden voor alle beschikbare platforms

Platform	Versie	Pakketgrootte	Geïnstalleerde grootte	Bestanden
alpha (unofficial port)	6.0.31+dfsg-1	210,9 kB	832,0 kB	[overzicht]
amd64	6.3.1+dfsg-1	341,5 kB	1.177,0 kB	[overzicht]
arm64	6.3.1+dfsg-1+b1	320,8 kB	1.182,0 kB	[overzicht]
hppa (unofficial port)	6.0.31+dfsg-2	207,9 kB	780,0 kB	[overzicht]
ia64 (unofficial port)	6.3.1+dfsg-1	397,3 kB	1.577,0 kB	[overzicht]
m68k (unofficial port)	6.0.31+dfsg-2	207,1 kB	771,0 kB	[overzicht]
ppc64 (unofficial port)	6.3.1+dfsg-1	337,2 kB	1.245,0 kB	[overzicht]
ppc64el	6.3.1+dfsg-1	334,7 kB	1.245,0 kB	[overzicht]
riscv64	6.3.1+dfsg-1	341,6 kB	1.033,0 kB	[overzicht]
s390x	6.3.1+dfsg-1	310,6 kB	1.125,0 kB	[overzicht]
sh4 (unofficial port)	6.0.31+dfsg-2	221,7 kB	764,0 kB	[overzicht]
sparc64 (unofficial port)	6.0.8+dfsg-1	187,0 kB	834,0 kB	[overzicht]
x32 (unofficial port)	6.3.1+dfsg-1	346,8 kB	1.162,0 kB	[overzicht]