[ Source: probalign ]
Package: probalign (1.4-10 and others)
Links for probalign
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Download Source Package probalign:
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External Resources:
- Homepage [web.njit.edu]
Similar packages:
multiple sequence alignment using partition function posterior probabilities
Probalign uses partition function posterior probability estimates to compute maximum expected accuracy multiple sequence alignments. It performs statistically significantly better than the leading alignment programs Probcons v1.1, MAFFT v5.851, and MUSCLE v3.6 on BAliBASE 3.0, HOMSTRAD, and OXBENCH benchmarks. Probalign improvements are largest on datasets containing N/C terminal extensions and on datasets with long and heterogeneous length sequences. On heteregeneous length datasets containing repeats Probalign alignment accuracy is 10% and 15% higher than the other three methods when standard deviation of length is at least 300 and 400.
Other Packages Related to probalign
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- dep: libc6 (>= 2.34) [not alpha, arm64, ia64, sh4]
- GNU C Library: Shared libraries
also a virtual package provided by libc6-udeb
- dep: libc6 (>= 2.36) [sh4]
- dep: libc6 (>= 2.38) [arm64]
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- dep: libc6.1 (>= 2.34) [alpha]
- GNU C Library: Shared libraries
also a virtual package provided by libc6.1-udeb
- dep: libc6.1 (>= 2.36) [ia64]
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- dep: libgcc-s1 (>= 3.0) [not armel, armhf, hppa, ia64, m68k, ppc64, ppc64el, sh4]
- GCC support library
- dep: libgcc-s1 (>= 3.3.4) [sh4]
- dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]
- dep: libgcc-s1 (>= 3.5) [armel, armhf]
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- dep: libgcc-s2 (>= 4.2.1) [m68k]
- GCC support library
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- dep: libgcc-s4 (>= 4.1.1) [hppa]
- GCC support library
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- dep: libstdc++6 (>= 11) [not arm64, riscv64]
- GNU Standard C++ Library v3
- dep: libstdc++6 (>= 13.1) [arm64, riscv64]
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- dep: libunwind8 [ia64]
- library to determine the call-chain of a program - runtime
Download probalign
| Architecture | Version | Package Size | Installed Size | Files |
|---|---|---|---|---|
| alpha (unofficial port) | 1.4-10 | 69.0 kB | 220.0 kB | [list of files] |
| amd64 | 1.4-10 | 68.9 kB | 175.0 kB | [list of files] |
| arm64 | 1.4-10+b1 | 66.9 kB | 220.0 kB | [list of files] |
| armel | 1.4-10 | 55.1 kB | 142.0 kB | [list of files] |
| armhf | 1.4-10 | 53.9 kB | 114.0 kB | [list of files] |
| hppa (unofficial port) | 1.4-10 | 66.9 kB | 156.0 kB | [list of files] |
| i386 | 1.4-10 | 61.4 kB | 158.0 kB | [list of files] |
| ia64 (unofficial port) | 1.4-10 | 97.8 kB | 292.0 kB | [list of files] |
| m68k (unofficial port) | 1.4-10 | 60.2 kB | 162.0 kB | [list of files] |
| mips64el | 1.4-10 | 65.4 kB | 223.0 kB | [list of files] |
| ppc64 (unofficial port) | 1.4-10 | 70.0 kB | 219.0 kB | [list of files] |
| ppc64el | 1.4-10 | 78.4 kB | 219.0 kB | [list of files] |
| riscv64 | 1.4-10+b1 | 67.4 kB | 132.0 kB | [list of files] |
| s390x | 1.4-10 | 56.7 kB | 171.0 kB | [list of files] |
| sh4 (unofficial port) | 1.4-10 | 72.5 kB | 155.0 kB | [list of files] |
| sparc64 (unofficial port) | 1.4-10 | 60.5 kB | 1,054.0 kB | [list of files] |
| x32 (unofficial port) | 1.4-10 | 70.0 kB | 170.0 kB | [list of files] |