Package: maffilter (1.3.1+dfsg-6 and others)

Links for maffilter

Debian Resources:

Download Source Package maffilter:

Maintainers:

Debian Med Packaging Team (QA Page, Mail Archive)
Andreas Tille (QA Page)
Julien Dutheil (QA Page)
Pranav Ballaney (QA Page)

External Resources:

Homepage [jydu.github.io]

Similar packages:

Behandl genomsammenligning i Multiple Alignment Format

MafFilter anvender en serie af »filtre« på en MAF-fil, for at rense den, udtrække data og computerstatistik mens der holdes styr på de associerede metadata såsom genomkoordinater og kvalitetsbedømmelser.

 * Kan behandle sammenligningen for at fjerne maskerede regioner i lav
   kvalitet og/eller tvetydige.
 * Kan eksportere data i en enkel eller flere sammenligningsfiler i et
   format såsom Fasta eller clustal.
 * Kan læse annotationsdata i GFF- eller GTF-format, og udtrække den
   tilsvarende sammenligning
 * Kan udføre glidende vinduesberegninger
 * Kan rekonstruere fylogeni/slægtsforskning sammen med
   genomsammenligningen.
 * Kan beregne statistik for populationsgenetik, såsom
   stedfrekvensspektrum, antallet af faste/pymorfiske steder etc.

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sug: maffilter-examples

Behandl genomsammenligning i Multiple Alignment Format - dataeksempler

Download maffilter

Download for all available architectures
Architecture	Version	Package Size	Installed Size	Files
alpha (unofficial port)	1.3.1+dfsg-6	240.8 kB	1,373.0 kB	[list of files]
amd64	1.3.1+dfsg-6	259.5 kB	1,308.0 kB	[list of files]
arm64	1.3.1+dfsg-6+b1	238.6 kB	1,369.0 kB	[list of files]
armel	1.3.1+dfsg-6	222.9 kB	1,179.0 kB	[list of files]
armhf	1.3.1+dfsg-6	228.8 kB	1,039.0 kB	[list of files]
hppa (unofficial port)	1.3.1+dfsg-6	248.4 kB	1,250.0 kB	[list of files]
i386	1.3.1+dfsg-6	266.2 kB	1,271.0 kB	[list of files]
ia64 (unofficial port)	1.3.1+dfsg-6	273.0 kB	1,911.0 kB	[list of files]
loong64 (unofficial port)	1.3.1+dfsg-6	241.2 kB	1,322.0 kB	[list of files]
m68k (unofficial port)	1.3.1+dfsg-6	248.5 kB	1,255.0 kB	[list of files]
mips64el	1.3.1+dfsg-6	225.2 kB	1,489.0 kB	[list of files]
ppc64 (unofficial port)	1.3.1+dfsg-6	256.3 kB	1,560.0 kB	[list of files]
ppc64el	1.3.1+dfsg-6	254.5 kB	1,432.0 kB	[list of files]
riscv64	1.3.1+dfsg-6	248.2 kB	1,176.0 kB	[list of files]
s390x	1.3.1+dfsg-6	247.8 kB	1,320.0 kB	[list of files]
sh4 (unofficial port)	1.3.1+dfsg-6	284.3 kB	1,304.0 kB	[list of files]
sparc64 (unofficial port)	1.3.1+dfsg-6	220.7 kB	1,503.0 kB	[list of files]
x32 (unofficial port)	1.3.1+dfsg-6+b1	261.3 kB	1,252.0 kB	[list of files]