Пакет: r-bioc-shortread (1.64.0-3)

[ Източник: r-bioc-shortread  ]

GNU R classes and methods for high-throughput short-read sequencing data

This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.

Други пакети, свързани с r-bioc-shortread

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.7) [mips64el, s390x]

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: r-api-4.0

  виртуален пакет, предлаган от r-base-core

• dep: r-api-bioc-3.20

  виртуален пакет, предлаган от r-bioc-biocgenerics

• dep: r-bioc-biobase

  base functions for Bioconductor

• dep: r-bioc-biocgenerics (>= 0.23.3)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.47.6)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.15.2)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicalignments (>= 1.15.6)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-genomicranges (>= 1.31.8)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.13.12)

  GNU R low-level containers for storing sets of integer ranges

• dep: r-bioc-pwalign

  Perform pairwise sequence alignments

• dep: r-bioc-rhtslib

  HTSlib high-throughput sequencing library as GNU R package

• dep: r-bioc-rsamtools (>= 1.31.2)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.17.25)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector

  BioConductor representation and manpulation of external sequences

• dep: r-cran-hwriter

  HTML Writer - Outputs R objects in HTML format

• dep: r-cran-lattice

  GNU R package for 'Trellis' graphics

• dep: r-cran-latticeextra

  GNU R package of additional graphical displays based on lattice

• dep: zlib1g (>= 1:1.1.4)

  compression library - runtime

• sug: r-bioc-biocstyle

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biomart

  GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)

• sug: r-bioc-genomicfeatures

  GNU R tools for making and manipulating transcript centric annotations

• sug: r-cran-knitr

  GNU R package for dynamic report generation using Literate Programming

• sug: r-cran-runit

  GNU R package providing unit testing framework

Изтегляне на r-bioc-shortread

Изтегляне за всички налични архитектури

Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	5 097,5 кБ	8 210,0 кБ	[списък на файловете]
arm64	5 093,3 кБ	8 256,0 кБ	[списък на файловете]
mips64el	5 090,3 кБ	8 270,0 кБ	[списък на файловете]
ppc64el	5 099,2 кБ	8 320,0 кБ	[списък на файловете]
riscv64	5 095,3 кБ	8 190,0 кБ	[списък на файловете]
s390x	5 095,9 кБ	8 220,0 кБ	[списък на файловете]