Пакет: r-bioc-shortread (1.62.0-1)

[ Източник: r-bioc-shortread  ]

GNU R classes and methods for high-throughput short-read sequencing data

This BioConductor module is a package for input, quality assessment, manipulation and output of high-throughput sequencing data. ShortRead is provided in the R and Bioconductor environments, allowing ready access to additional facilities for advanced statistical analysis, data transformation, visualization and integration with diverse genomic resources.

Други пакети, свързани с r-bioc-shortread

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.7) [mips64el, s390x]

• dep: libgcc-s1 (>= 3.0)

  GCC support library

• dep: libstdc++6 (>= 11)

  GNU Standard C++ Library v3

• dep: r-api-4.0

  виртуален пакет, предлаган от r-base-core

• dep: r-api-bioc-3.19

  виртуален пакет, предлаган от r-bioc-biocgenerics

• dep: r-bioc-biobase (>= 2.64.0)

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• dep: r-bioc-biocgenerics (>= 0.50.0)

  generic functions for Bioconductor

• dep: r-bioc-biocparallel (>= 1.38.0)

  BioConductor facilities for parallel evaluation

• dep: r-bioc-biostrings (>= 2.72.1)

  GNU R string objects representing biological sequences

• dep: r-bioc-genomeinfodb (>= 1.40.1)

  BioConductor utilities for manipulating chromosome identifiers

• dep: r-bioc-genomicalignments (>= 1.40.0)

  BioConductor representation and manipulation of short genomic alignments

• dep: r-bioc-genomicranges (>= 1.56.1)

  BioConductor representation and manipulation of genomic intervals

• dep: r-bioc-iranges (>= 2.38.1)

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• dep: r-bioc-pwalign (>= 1.0.0-2~0exp1)

  Perform pairwise sequence alignments

• dep: r-bioc-rhtslib (>= 3.0.0)

  HTSlib high-throughput sequencing library as GNU R package

• dep: r-bioc-rsamtools (>= 2.20.0)

  GNU R binary alignment (BAM), variant call (BCF), or tabix file import

• dep: r-bioc-s4vectors (>= 0.42.1)

  BioConductor S4 implementation of vectors and lists

• dep: r-bioc-xvector (>= 0.44.0)

  BioConductor representation and manpulation of external sequences

• dep: r-bioc-zlibbioc (>= 1.50.0)

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• dep: r-cran-hwriter

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• dep: r-cran-lattice

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• dep: r-cran-latticeextra

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• dep: zlib1g (>= 1:1.1.4)

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• sug: r-bioc-biocstyle (>= 2.32.1)

  standard styles for vignettes and other Bioconductor documents

• sug: r-bioc-biomart (>= 2.60.1)

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• sug: r-bioc-genomicfeatures (>= 1.56.0)

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• sug: r-cran-knitr

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Изтегляне за всички налични архитектури

Архитектура	Големина на пакета	Големина след инсталиране	Файлове
amd64	5 095,4 кБ	8 206,0 кБ	[списък на файловете]
arm64	5 091,8 кБ	8 252,0 кБ	[списък на файловете]
mips64el	5 088,5 кБ	8 266,0 кБ	[списък на файловете]
ppc64el	5 097,7 кБ	8 316,0 кБ	[списък на файловете]
riscv64	5 094,1 кБ	8 186,0 кБ	[списък на файловете]
s390x	5 094,2 кБ	8 216,0 кБ	[списък на файловете]