套件：nanopolish（0.14.0-1 以及其他的）

[ 原始碼： nanopolish  ]

consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

其他與 nanopolish 有關的套件

• dep: libc6 (>= 2.34)

  GNU C 函式庫：共用函式庫
  同時作為一個虛擬套件由這些套件填實： libc6-udeb

• dep: libgcc-s1 (>= 3.3.1) [除 armel, armhf, ppc64el]

  GCC 支援函式庫

  dep: libgcc-s1 (>= 3.4.4) [ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhdf5-103-1t64

  HDF5 C runtime files - serial version

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libslow5-0t64 (>= 0.5.1)

  library for reading & writing SLOW5 files

• dep: libstdc++6 (>= 13.1)

  GNU Standard C++ Library v3

• dep: libstreamvbyte0 (>= 0.4.1)

  fast integer compression in C using the StreamVByte codec

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4) [除 armel, armhf]

  壓縮函式庫 - 跑程式時用(runtime)

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf]

• rec: python3-biopython

  Python3 library for bioinformatics

• rec: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• sug: make

  utility for directing compilation

• sug: perl

  Larry Wall's Practical Extraction and Report Language

下載 nanopolish

下載可用於所有硬體架構的

硬體架構	版本	套件大小	安裝後大小	檔案
amd64	0.14.0-1+b1	2，144。8 kB	9，343。0 kB	[檔案列表]
arm64	0.14.0-1+b1	2，073。9 kB	9，219。0 kB	[檔案列表]
armel	0.14.0-1+b1	2，078。6 kB	9，253。0 kB	[檔案列表]
armhf	0.14.0-1+b1	2，085。1 kB	8，861。0 kB	[檔案列表]
i386	0.14.0-1+b1	2，167。9 kB	9，413。0 kB	[檔案列表]
mips64el	0.14.0-1+b1	2，105。4 kB	9，592。0 kB	[檔案列表]
ppc64el	0.14.0-1+b1	2，149。2 kB	9，603。0 kB	[檔案列表]