Пакет: nanopolish (0.14.0-1 и други)

[ Източник: nanopolish  ]

consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

Други пакети, свързани с nanopolish

• dep: libc6 (>= 2.38)

  GNU C Library: Shared libraries
  също и виртуален пакет, предлаган от libc6-udeb

• dep: libgcc-s1 (>= 3.3.1) [не armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhdf5-310 (>= 1.14.3)

  HDF5 C runtime files - serial version

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libslow5-0t64 (>= 0.5.1)

  library for reading & writing SLOW5 files

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

• dep: libstreamvbyte0 (>= 0.4.1)

  fast integer compression in C using the StreamVByte codec

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4) [не armel, armhf]

  compression library - runtime

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf]

• rec: python3-biopython

  Python3 library for bioinformatics

• rec: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• sug: make

  utility for directing compilation

• sug: perl

  Larry Wall's Practical Extraction and Report Language

Изтегляне на nanopolish

Изтегляне за всички налични архитектури

Архитектура	Версия	Големина на пакета	Големина след инсталиране	Файлове
amd64	0.14.0-1+b3	2 149,9 кБ	9 639,0 кБ	[списък на файловете]
arm64	0.14.0-1+b4	2 080,4 кБ	9 475,0 кБ	[списък на файловете]
armel	0.14.0-1+b2	2 085,0 кБ	9 533,0 кБ	[списък на файловете]
armhf	0.14.0-1+b3	2 087,4 кБ	9 217,0 кБ	[списък на файловете]
i386	0.14.0-1+b3	2 170,9 кБ	9 709,0 кБ	[списък на файловете]
mips64el	0.14.0-1+b2	2 106,0 кБ	9 846,0 кБ	[списък на файловете]
ppc64el	0.14.0-1+b2	2 150,9 кБ	9 859,0 кБ	[списък на файловете]
riscv64	0.14.0-1+b4	2 141,0 кБ	9 311,0 кБ	[списък на файловете]