Package: nanopolish (0.14.0-1 and others)

[ Source: nanopolish  ]

consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

Other Packages Related to nanopolish

• dep: libc6 (>= 2.38)

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

• dep: libgcc-s1 (>= 3.3.1) [not armel, armhf]

  GCC support library

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhdf5-310 (>= 1.14.3)

  HDF5 C runtime files - serial version

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libslow5-0t64 (>= 0.5.1)

  library for reading & writing SLOW5 files

• dep: libstdc++6 (>= 14)

  GNU Standard C++ Library v3

• dep: libstreamvbyte0 (>= 0.4.1)

  fast integer compression in C using the StreamVByte codec

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4) [not armel, armhf]

  compression library - runtime

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf]

• rec: python3-biopython

  Python3 library for bioinformatics

• rec: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• sug: make

  utility for directing compilation

• sug: perl

  Larry Wall's Practical Extraction and Report Language

Download nanopolish

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	0.14.0-1+b2	2,149.8 kB	9,639.0 kB	[list of files]
arm64	0.14.0-1+b3	2,079.4 kB	9,475.0 kB	[list of files]
armel	0.14.0-1+b2	2,085.0 kB	9,533.0 kB	[list of files]
armhf	0.14.0-1+b2	2,090.4 kB	9,129.0 kB	[list of files]
i386	0.14.0-1+b2	2,171.1 kB	9,713.0 kB	[list of files]
mips64el	0.14.0-1+b2	2,106.0 kB	9,846.0 kB	[list of files]
ppc64el	0.14.0-1+b2	2,150.9 kB	9,859.0 kB	[list of files]
riscv64	0.14.0-1+b3	2,144.4 kB	9,315.0 kB	[list of files]