Paket: nanopolish (0.14.0-1 och andra)

[ Källkod: nanopolish  ]

consensus caller for nanopore sequencing data

Nanopolish uses a signal-level hidden Markov model for consensus calling of nanopore genome sequencing data. It can perform signal-level analysis of Oxford Nanopore sequencing data. Nanopolish can calculate an improved consensus sequence for a draft genome assembly, detect base modifications, call SNPs and indels with respect to a reference genome and more.

Andra paket besläktade med nanopolish

• dep: libc6 (>= 2.38)

  GNU C-bibliotek: Delade bibliotek
  också ett virtuellt paket som tillhandahålls av libc6-udeb

• dep: libgcc-s1 (>= 3.3.1) [ej armel, armhf]

  GCC stödbibliotek

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhdf5-310 (>= 1.14.3)

  HDF5 C runtime files - serial version

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libslow5-0t64 (>= 0.5.1)

  library for reading & writing SLOW5 files

• dep: libstdc++6 (>= 14)

  GNU standardbibliotek v3 för C++

• dep: libstreamvbyte0 (>= 0.4.1)

  fast integer compression in C using the StreamVByte codec

• dep: perl

  Larry Wall's Practical Extraction and Report Language

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: zlib1g (>= 1:1.1.4) [ej armel, armhf]

  Kompressionsbibliotek - körtidspaket

  dep: zlib1g (>= 1:1.2.3.3) [armel, armhf]

• rec: python3-biopython

  Python3 library for bioinformatics

• rec: python3-pysam

  interface for the SAM/BAM sequence alignment and mapping format (Python 3)

• sug: make

  utility for directing compilation

• sug: perl

  Larry Wall's Practical Extraction and Report Language

Hämta nanopolish

Hämtningar för alla tillgängliga arkitekturer

Arkitektur	Version	Paketstorlek	Installerad storlek	Filer
amd64	0.14.0-1+b3	2.149,9 kbyte	9.639,0 kbyte	[filförteckning]
arm64	0.14.0-1+b4	2.080,4 kbyte	9.475,0 kbyte	[filförteckning]
armel	0.14.0-1+b2	2.085,0 kbyte	9.533,0 kbyte	[filförteckning]
armhf	0.14.0-1+b3	2.087,4 kbyte	9.217,0 kbyte	[filförteckning]
i386	0.14.0-1+b3	2.170,9 kbyte	9.709,0 kbyte	[filförteckning]
mips64el	0.14.0-1+b2	2.106,0 kbyte	9.846,0 kbyte	[filförteckning]
ppc64el	0.14.0-1+b2	2.150,9 kbyte	9.859,0 kbyte	[filförteckning]
riscv64	0.14.0-1+b4	2.141,0 kbyte	9.311,0 kbyte	[filförteckning]