软件包：maffilter（1.3.1+dfsg-2 以及其他的）

maffilter 的相关链接

Debian 的资源：

下载源码包 maffilter：

维护小组：

外部的资源：

主页 [jydu.github.io]

相似软件包：

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

其他与 maffilter 有关的软件包

依赖

推荐

建议

增强

dep: libboost-iostreams1.74.0 (>= 1.74.0)

Boost.Iostreams Library
dep: libbpp-core4 (>= 2.4.1)

Bio++ Core library
dep: libbpp-phyl-omics3 (>= 2.4.1)

Bio++ Phylogenetics library: genomics components
dep: libbpp-phyl12 (>= 2.4.1)

Bio++ Phylogenetic library
dep: libbpp-seq-omics3 (>= 2.4.1)

Bio++ Sequence library: genomics components
dep: libbpp-seq12 (>= 2.4.1)

Bio++ Sequence library
dep: libc6 (>= 2.1.3) [i386]

GNU C 语言运行库：共享库
同时作为一个虚包由这些包填实： libc6-udeb

dep: libc6 (>= 2.14) [amd64]

dep: libc6 (>= 2.17) [arm64, ppc64el]

dep: libc6 (>= 2.2) [mips64el, mipsel, s390x]

dep: libc6 (>= 2.4) [armel, armhf]
dep: libgcc-s1 (>= 3.0) [除 armel, armhf]

GCC 支持库

dep: libgcc-s1 (>= 3.5) [armel, armhf]
dep: libstdc++6 (>= 5.2) [armel, armhf]

GNU 标准 C++ 库，第3版

dep: libstdc++6 (>= 9) [除 armel, armhf]

sug: maffilter-examples

process genome alignment in the Multiple Alignment Format (example data)

下载 maffilter

下载可用于所有硬件架构的
硬件架构	版本	软件包大小	安装后大小	文件
amd64	1.3.1+dfsg-2+b1	255.5 kB	1,321.0 kB	[文件列表]
arm64	1.3.1+dfsg-2+b1	235.9 kB	1,281.0 kB	[文件列表]
armel	1.3.1+dfsg-2+b1	218.3 kB	1,148.0 kB	[文件列表]
armhf	1.3.1+dfsg-2+b1	223.5 kB	1,020.0 kB	[文件列表]
i386	1.3.1+dfsg-2+b1	262.6 kB	1,300.0 kB	[文件列表]
mips64el	1.3.1+dfsg-2+b1	220.0 kB	1,456.0 kB	[文件列表]
mipsel	1.3.1+dfsg-2+b1	222.4 kB	1,385.0 kB	[文件列表]
ppc64el	1.3.1+dfsg-2+b1	254.2 kB	1,433.0 kB	[文件列表]
s390x	1.3.1+dfsg-2+b1	234.7 kB	1,333.0 kB	[文件列表]