软件包：maffilter（1.3.1+dfsg-6 以及其他的）

[ 源代码： maffilter  ]

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

其他与 maffilter 有关的软件包

• dep: libboost-iostreams1.83.0 (>= 1.83.0)

  Boost.Iostreams Library

• dep: libbpp-core4t64 (>= 2.4.1)

  Bio++ Core library

• dep: libbpp-phyl-omics3t64 (>= 2.4.1)

  Bio++ Phylogenetics library: genomics components

• dep: libbpp-phyl12t64 (>= 2.4.1)

  Bio++ Phylogenetic library

• dep: libbpp-seq-omics3t64 (>= 2.4.1)

  Bio++ Sequence library: genomics components

• dep: libbpp-seq12t64 (>= 2.4.1)

  Bio++ Sequence library

• dep: libc6 (>= 2.34)

  GNU C 语言运行库：共享库
  同时作为一个虚包由这些包填实： libc6-udeb

• dep: libgcc-s1 (>= 3.0) [除 armel, armhf, riscv64]

  GCC 支持库

  dep: libgcc-s1 (>= 3.4) [riscv64]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 13.1)

  GNU 标准 C++ 库，第3版

• sug: maffilter-examples

  process genome alignment in the Multiple Alignment Format (example data)

下载 maffilter

下载可用于所有硬件架构的

硬件架构	版本	软件包大小	安装后大小	文件
amd64	1.3.1+dfsg-6	259.5 kB	1,308.0 kB	[文件列表]
arm64	1.3.1+dfsg-6+b1	238.6 kB	1,369.0 kB	[文件列表]
armel	1.3.1+dfsg-6	222.9 kB	1,179.0 kB	[文件列表]
armhf	1.3.1+dfsg-6	228.8 kB	1,039.0 kB	[文件列表]
i386	1.3.1+dfsg-6	266.2 kB	1,271.0 kB	[文件列表]
mips64el	1.3.1+dfsg-6	225.2 kB	1,489.0 kB	[文件列表]
ppc64el	1.3.1+dfsg-6	254.5 kB	1,432.0 kB	[文件列表]
riscv64	1.3.1+dfsg-6	248.2 kB	1,176.0 kB	[文件列表]
s390x	1.3.1+dfsg-6	247.8 kB	1,320.0 kB	[文件列表]