Paketti: maffilter (1.3.1+dfsg-2 ja muut)

[ Source: maffilter  ]

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

Muut pakettiin maffilter liittyvät paketit

• dep: libboost-iostreams1.74.0 (>= 1.74.0)

  Boost.Iostreams -kirjasto

• dep: libbpp-core4 (>= 2.4.1)

  Bio++ Core library

• dep: libbpp-phyl-omics3 (>= 2.4.1)

  Bio++ Phylogenetics library: genomics components

• dep: libbpp-phyl12 (>= 2.4.1)

  Bio++ Phylogenetic library

• dep: libbpp-seq-omics3 (>= 2.4.1)

  Bio++ Sequence library: genomics components

• dep: libbpp-seq12 (>= 2.4.1)

  Bio++ Sequence library

• dep: libc6 (>= 2.1.3) [i386]

  GNU-C-kirjasto: jaetut kirjastot
  myös näennäispaketti, jonka toteuttaa libc6-udeb

  dep: libc6 (>= 2.14) [amd64]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.2) [mips64el, mipsel, s390x]

  dep: libc6 (>= 2.4) [armel, armhf]

• dep: libgcc-s1 (>= 3.0) [ei armel, armhf]

  GCC:n apukirjasto

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU standardi C++ -kirjasto, versio 3

  dep: libstdc++6 (>= 9) [ei armel, armhf]

• sug: maffilter-examples

  process genome alignment in the Multiple Alignment Format (example data)

Imuroi maffilter

Imurointi kaikille saataville arkkitehtuureille

Arkkitehtuuri	Versio	Paketin koko	Koko asennettuna	Tiedostot
amd64	1.3.1+dfsg-2+b1	255.5 kt	1,321.0 kt	[tiedostoluettelo]
arm64	1.3.1+dfsg-2+b1	235.9 kt	1,281.0 kt	[tiedostoluettelo]
armel	1.3.1+dfsg-2+b1	218.3 kt	1,148.0 kt	[tiedostoluettelo]
armhf	1.3.1+dfsg-2+b1	223.5 kt	1,020.0 kt	[tiedostoluettelo]
i386	1.3.1+dfsg-2+b1	262.6 kt	1,300.0 kt	[tiedostoluettelo]
mips64el	1.3.1+dfsg-2+b1	220.0 kt	1,456.0 kt	[tiedostoluettelo]
mipsel	1.3.1+dfsg-2+b1	222.4 kt	1,385.0 kt	[tiedostoluettelo]
ppc64el	1.3.1+dfsg-2+b1	254.2 kt	1,433.0 kt	[tiedostoluettelo]
s390x	1.3.1+dfsg-2+b1	234.7 kt	1,333.0 kt	[tiedostoluettelo]