Package: maffilter (1.3.1+dfsg-2 and others)

[ Source: maffilter  ]

process genome alignment in the Multiple Alignment Format

MafFilter applies a series of "filters" to a MAF file, in order to clean it, extract data and computer statistics while keeping track of the associated meta-data such as genome coordinates and quality scores.

 * It can process the alignment to remove low-quality / ambiguous /
   masked regions.
 * It can export data into a single or multiple alignment file in
   format such as Fasta or Clustal.
 * It can read annotation data in GFF or GTF format, and extract the
   corresponding alignment.
 * It can perform sliding windows calculations.
 * It can reconstruct phylogeny/genealogy along the genome alignment.
 * It can compute population genetics statistics, such as site
   frequency spectrum, number of fixed/polymorphic sites, etc.

Other Packages Related to maffilter

• dep: libboost-iostreams1.74.0 (>= 1.74.0)

  Boost.Iostreams Library

• dep: libbpp-core4 (>= 2.4.1)

  Bio++ Core library

• dep: libbpp-phyl-omics3 (>= 2.4.1)

  Bio++ Phylogenetics library: genomics components

• dep: libbpp-phyl12 (>= 2.4.1)

  Bio++ Phylogenetic library

• dep: libbpp-seq-omics3 (>= 2.4.1)

  Bio++ Sequence library: genomics components

• dep: libbpp-seq12 (>= 2.4.1)

  Bio++ Sequence library

• dep: libc6 (>= 2.1.3) [i386]

  GNU C könyvtár: megosztott könyvtárak
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.14) [amd64]

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.2) [mips64el, mipsel, s390x]

  dep: libc6 (>= 2.4) [armel, armhf]

• dep: libgcc-s1 (>= 3.0) [not armel, armhf]

  GCC támogató programkönyvtár

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

• dep: libstdc++6 (>= 5.2) [armel, armhf]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 9) [not armel, armhf]

• sug: maffilter-examples

  process genome alignment in the Multiple Alignment Format (example data)

Download maffilter

Download for all available architectures

Architecture	Version	Package Size	Installed Size	Files
amd64	1.3.1+dfsg-2+b1	255.5 kB	1,321.0 kB	[list of files]
arm64	1.3.1+dfsg-2+b1	235.9 kB	1,281.0 kB	[list of files]
armel	1.3.1+dfsg-2+b1	218.3 kB	1,148.0 kB	[list of files]
armhf	1.3.1+dfsg-2+b1	223.5 kB	1,020.0 kB	[list of files]
i386	1.3.1+dfsg-2+b1	262.6 kB	1,300.0 kB	[list of files]
mips64el	1.3.1+dfsg-2+b1	220.0 kB	1,456.0 kB	[list of files]
mipsel	1.3.1+dfsg-2+b1	222.4 kB	1,385.0 kB	[list of files]
ppc64el	1.3.1+dfsg-2+b1	254.2 kB	1,433.0 kB	[list of files]
s390x	1.3.1+dfsg-2+b1	234.7 kB	1,333.0 kB	[list of files]