Package: python3-cyvcf2 (0.31.0-1)

[ Source: cyvcf2  ]

VCF parser based on htslib (Python 3)

This modules allows fast parsing of VCF and BCF including region-queries with Python. This is essential for efficient analyses of nucleotide variation with Python on high-throughput sequencing data.

cyvcf2 is a cython wrapper around htslib. Attributes like variant.gt_ref_depths return a numpy array directly so they are immediately ready for downstream use.

This package installs the library for Python 3.

Other Packages Related to python3-cyvcf2

• dep: libc6 (>= 2.14) [amd64]

  GNU C Library: Shared libraries
  also a virtual package provided by libc6-udeb

  dep: libc6 (>= 2.17) [arm64, ppc64el]

  dep: libc6 (>= 2.27) [riscv64]

  dep: libc6 (>= 2.7) [not amd64, arm64, ppc64el, riscv64]

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: python3

  interactive high-level object-oriented language (default python3 version)

  dep: python3 (<< 3.13)

  dep: python3 (>= 3.11~)

• dep: python3-click

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• dep: python3-coloredlogs

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• dep: python3-numpy (>= 1:1.25.0)

  Fast array facility to the Python language (Python 3)

• dep: python3-numpy-abi9

  virtual package provided by python3-numpy

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riscv64	977.5 kB	5,192.0 kB	[list of files]
s390x	946.9 kB	5,500.0 kB	[list of files]