Package: python3-cyvcf2 (0.31.1-2 and others)

[ Source: cyvcf2  ]

VCF parser based on htslib (Python 3)

This modules allows fast parsing of VCF and BCF including region-queries with Python. This is essential for efficient analyses of nucleotide variation with Python on high-throughput sequencing data.

cyvcf2 is a cython wrapper around htslib. Attributes like variant.gt_ref_depths return a numpy array directly so they are immediately ready for downstream use.

This package installs the library for Python 3.

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  dep: libc6 (>= 2.17) [arm64, ppc64el]

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  dep: libc6 (>= 2.7) [not amd64, arm64, ppc64el, riscv64]

• dep: libhts3t64 (>= 1.17)

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  Package not available

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Architecture	Version	Package Size	Installed Size	Files
amd64	0.31.1-2+b3	886.6 kB	5,624.0 kB	[list of files]
arm64	0.31.1-2+b3	849.1 kB	5,559.0 kB	[list of files]
armel	0.31.1-2+b3	848.3 kB	5,549.0 kB	[list of files]
armhf	0.31.1-2+b3	852.8 kB	5,357.0 kB	[list of files]
i386	0.31.1-2+b4	881.9 kB	5,645.0 kB	[list of files]
mips64el	0.31.1-2+b3	825.7 kB	5,642.0 kB	[list of files]
ppc64el	0.31.1-2+b3	874.6 kB	5,751.0 kB	[list of files]
riscv64	0.31.1-2+b3	883.3 kB	5,403.0 kB	[list of files]
s390x	0.31.1-2+b3	864.6 kB	5,594.0 kB	[list of files]