Paket: stacks (2.68+dfsg-1 ve diğerleri)

[ Kaynak: stacks  ]

pipeline for building loci from short-read DNA sequences

Stacks is a software pipeline for building loci from short-read sequences, such as those generated on the Illumina platform. Stacks was developed to work with restriction enzyme-based data, such as RAD-seq, for the purpose of building genetic maps and conducting population genomics and phylogeography.

Note that this package installs Stacks such that all commands must be run as: $ stacks <cmdname> <args>

stacks ile İlgili Diğer Paketler

• dep: bsdextrautils

  extra utilities from 4.4BSD-Lite

• dep: libc6 (>= 2.38) [alpha, ia64, sh4 değil]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6-udeb

  dep: libc6 (>= 2.39) [sh4]

• dep: libc6.1 (>= 2.37) [ia64]

  GNU C Library: Shared libraries
  ayrıca şunun tarafından sağlanan bir sanal paket libc6.1-udeb

  dep: libc6.1 (>= 2.38) [alpha]

• dep: libdbi-perl

  Perl Database Interface (DBI)

• dep: libgcc-s1 (>= 3.0) [amd64, arm64, i386, mips64el, s390x, x32]

  GCC support library

  dep: libgcc-s1 (>= 3.4) [alpha, riscv64, sh4, sparc64]

  dep: libgcc-s1 (>= 3.4.4) [ppc64, ppc64el]

  dep: libgcc-s1 (>= 3.5) [armel, armhf]

  dep: libgcc-s1 (>= 4.2) [ia64]

• dep: libgcc-s2 (>= 4.2.1) [m68k]

  GCC support library

• dep: libgcc-s4 (>= 4.1.1) [hppa]

  GCC support library

• dep: libgomp1 (>= 6)

  GCC OpenMP (GOMP) support library

• dep: libhts3t64 (>= 1.17)

  C library for high-throughput sequencing data formats

• dep: libstdc++6 (>= 13.1) [ia64, m68k]

  GNU Standard C++ Library v3

  dep: libstdc++6 (>= 14) [ia64, m68k değil]

• dep: libunwind8 [ia64]

  library to determine the call-chain of a program - runtime

• dep: python3

  interactive high-level object-oriented language (default python3 version)

• dep: samtools

  processing sequence alignments in SAM, BAM and CRAM formats

• dep: zlib1g (>= 1:1.2.6)

  compression library - runtime

• rec: libspreadsheet-writeexcel-perl

  module to create Excel spreadsheets

• rec: littler

  GNU R scripting and command-line front-end -- transition package
  ayrıca şunun tarafından sağlanan bir sanal paket r-cran-littler

• sug: gdb

  GNU Debugger
  ayrıca şunun tarafından sağlanan bir sanal paket gdb-minimal

stacks indir

Tüm mevcut mimariler için indir

Mimari	Sürüm	Paket Boyutu	Kurulu Boyut	Dosyalar
alpha (resmi olmayan port)	2.68+dfsg-1	1.111,6 kB	6.814,0 kB	[dosya listesi]
amd64	2.68+dfsg-1	1.229,7 kB	6.153,0 kB	[dosya listesi]
arm64	2.68+dfsg-1	1.053,9 kB	5.829,0 kB	[dosya listesi]
armel	2.68+dfsg-1	1.021,0 kB	5.341,0 kB	[dosya listesi]
armhf	2.68+dfsg-1	1.044,3 kB	3.781,0 kB	[dosya listesi]
hppa (resmi olmayan port)	2.68+dfsg-1	1.082,3 kB	5.474,0 kB	[dosya listesi]
i386	2.68+dfsg-1	1.299,2 kB	6.437,0 kB	[dosya listesi]
ia64 (resmi olmayan port)	2.66+dfsg-1+b1	1.286,9 kB	11.193,0 kB	[dosya listesi]
m68k (resmi olmayan port)	2.68+dfsg-1	1.101,0 kB	5.753,0 kB	[dosya listesi]
mips64el	2.68+dfsg-1	1.102,8 kB	7.664,0 kB	[dosya listesi]
ppc64 (resmi olmayan port)	2.68+dfsg-1	1.151,8 kB	7.749,0 kB	[dosya listesi]
ppc64el	2.68+dfsg-1	1.168,3 kB	7.109,0 kB	[dosya listesi]
riscv64	2.68+dfsg-1	1.145,9 kB	4.405,0 kB	[dosya listesi]
s390x	2.68+dfsg-1	1.156,0 kB	6.289,0 kB	[dosya listesi]
sh4 (resmi olmayan port)	2.68+dfsg-1	1.347,3 kB	5.689,0 kB	[dosya listesi]
sparc64 (resmi olmayan port)	2.68+dfsg-1	983,6 kB	12.602,0 kB	[dosya listesi]
x32 (resmi olmayan port)	2.68+dfsg-1	1.235,1 kB	5.813,0 kB	[dosya listesi]